| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is tilS [H]
Identifier: 103487083
GI number: 103487083
Start: 1674728
End: 1675582
Strand: Direct
Name: tilS [H]
Synonym: Sala_1598
Alternate gene names: 103487083
Gene position: 1674728-1675582 (Clockwise)
Preceding gene: 103487082
Following gene: 103487084
Centisome position: 50.06
GC content: 70.41
Gene sequence:
>855_bases ATGGCGCTGCTCTGGATGATGGTCTCGCTGCTGCCCGGTCAGGTGTGGGCGGCGACGGTCGATCATGGCCTGCGCAAGGG ATCGGACGATGAAGCGCGCATGGTCGCGGCCTTCTGCGCGCGCGAACATATCCCCCATTCGACACTGCGACCGCCGACGC CGATCCGCGGATCGCTGCAGGCGGCGGCGCGCACCGAACGCTATCGTCTGCTCGAACAATGGCGCGAGGCCCATGCGCTC GACCATATCGTCACCGCGCATCATGCCGACGATCAGCTCGAAACGATCGTCATGCGGCTCAACCGCGCGAGCGGCGTCGG CGGGCTCGCCGCGATCCGCGCCACCAACGGCGCCGTGCTGCGCCCGCTCCTTGGCTGGCGACGCCGCGAACTGGTCGATG TCGCGCTCGACAACGACCTGCCCTTCATCGACGATCCCTCGAACAGCGACGATCGCTTCGACCGCGCGCGCCTGCGTCAT GCGCTGCGCTCGCAGACCGCGCTCGACCCCGTAGCCGCGGCGAAATCGGCGGCATGGCTCGCCGAGGCCGACGAGGCGCT CGACTGGACGGTCGATCGGCTCATCGCGGACTGGCCCGACGCCTCCGACATTGCGGTGATCCGCGACGAAGCCTATCCAC CCGAACTGTTCCGCCGCATCGTGGCCCATCGGCTGCGCGCCAATGCGCCGCAGCTGGCGCTGCGCGGCGCCGCGCTCGAC GGCGTGATCGCCGCGATGCGCGCCGGGCGGCGCGCGATGGTCGGCGCCTTGCTGATCGACGCCGATCGCGGGCTCGCAGG GACGATCTGGCGCATTTCCGCGGCGCCGCGCCGGAAGGCGCCCAAAAAGGCCTGA
Upstream 100 bases:
>100_bases CGACGTCGCGGGGCGGCTCGCCGGCGATCTCGCGGCGCTGCTTGGCGTCGGCTGGCACCGGCTGCATTATGGCGTCGCGG TATCGGGCGGCCCCGACAGC
Downstream 100 bases:
>100_bases TTGCCTCATTGTCATTTAACCCGATTATCCTATCTTGTCGGGTAGGAGCGCGCATTGCGCCGTTGAGGAAAGAACTCCGA ATGCAGGACGACAAGGAACC
Product: tRNA(Ile)-lysidine synthetase-like protein
Products: NA
Alternate protein names: tRNA(Ile)-2-lysyl-cytidine synthase; tRNA(Ile)-lysidine synthetase [H]
Number of amino acids: Translated: 284; Mature: 283
Protein sequence:
>284_residues MALLWMMVSLLPGQVWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRPPTPIRGSLQAAARTERYRLLEQWREAHAL DHIVTAHHADDQLETIVMRLNRASGVGGLAAIRATNGAVLRPLLGWRRRELVDVALDNDLPFIDDPSNSDDRFDRARLRH ALRSQTALDPVAAAKSAAWLAEADEALDWTVDRLIADWPDASDIAVIRDEAYPPELFRRIVAHRLRANAPQLALRGAALD GVIAAMRAGRRAMVGALLIDADRGLAGTIWRISAAPRRKAPKKA
Sequences:
>Translated_284_residues MALLWMMVSLLPGQVWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRPPTPIRGSLQAAARTERYRLLEQWREAHAL DHIVTAHHADDQLETIVMRLNRASGVGGLAAIRATNGAVLRPLLGWRRRELVDVALDNDLPFIDDPSNSDDRFDRARLRH ALRSQTALDPVAAAKSAAWLAEADEALDWTVDRLIADWPDASDIAVIRDEAYPPELFRRIVAHRLRANAPQLALRGAALD GVIAAMRAGRRAMVGALLIDADRGLAGTIWRISAAPRRKAPKKA >Mature_283_residues ALLWMMVSLLPGQVWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRPPTPIRGSLQAAARTERYRLLEQWREAHALD HIVTAHHADDQLETIVMRLNRASGVGGLAAIRATNGAVLRPLLGWRRRELVDVALDNDLPFIDDPSNSDDRFDRARLRHA LRSQTALDPVAAAKSAAWLAEADEALDWTVDRLIADWPDASDIAVIRDEAYPPELFRRIVAHRLRANAPQLALRGAALDG VIAAMRAGRRAMVGALLIDADRGLAGTIWRISAAPRRKAPKKA
Specific function: Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionin
COG id: COG0037
COG function: function code D; Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tRNA(Ile)-lysidine synthase family [H]
Homologues:
Organism=Escherichia coli, GI1786386, Length=148, Percent_Identity=35.8108108108108, Blast_Score=74, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012094 - InterPro: IPR012795 - InterPro: IPR014729 - InterPro: IPR011063 [H]
Pfam domain/function: PF01171 ATP_bind_3 [H]
EC number: NA
Molecular weight: Translated: 31305; Mature: 31174
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLWMMVSLLPGQVWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRPPTPIRGSLQ CHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH AAARTERYRLLEQWREAHALDHIVTAHHADDQLETIVMRLNRASGVGGLAAIRATNGAVL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHH RPLLGWRRRELVDVALDNDLPFIDDPSNSDDRFDRARLRHALRSQTALDPVAAAKSAAWL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AEADEALDWTVDRLIADWPDASDIAVIRDEAYPPELFRRIVAHRLRANAPQLALRGAALD HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH GVIAAMRAGRRAMVGALLIDADRGLAGTIWRISAAPRRKAPKKA HHHHHHHCCHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCCCC >Mature Secondary Structure ALLWMMVSLLPGQVWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRPPTPIRGSLQ HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH AAARTERYRLLEQWREAHALDHIVTAHHADDQLETIVMRLNRASGVGGLAAIRATNGAVL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHH RPLLGWRRRELVDVALDNDLPFIDDPSNSDDRFDRARLRHALRSQTALDPVAAAKSAAWL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AEADEALDWTVDRLIADWPDASDIAVIRDEAYPPELFRRIVAHRLRANAPQLALRGAALD HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH GVIAAMRAGRRAMVGALLIDADRGLAGTIWRISAAPRRKAPKKA HHHHHHHCCHHHHHHHHEEECCCCCCEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA