| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487061
Identifier: 103487061
GI number: 103487061
Start: 1648877
End: 1649929
Strand: Reverse
Name: 103487061
Synonym: Sala_1576
Alternate gene names: NA
Gene position: 1649929-1648877 (Counterclockwise)
Preceding gene: 103487062
Following gene: 103487060
Centisome position: 49.32
GC content: 64.77
Gene sequence:
>1053_bases ATGGTGAGCGGCGAGCGGTCCGTCGAACGGACATTCGTTATCGCGGAAGCGGGCGTCAACCACGACGGATCGCTCGACAA GGCGTTGCGTCTTGTCGATATCGCCGTCGAGGCCGGAGCCGATGCGGTCAAGTTTCAGACATTCCGAACCGACGAGGTGG TCACGCCCGACGCCGCCAAGGCCGCCTATCAACAACGTCAAACGGGCGCGGGCACGCAATATGAGATGATCCGGGCGCTC GAGCTGGACGATGCCGCGCACGAAAGACTTGCGCGCCATTGCGCCGAGCGCGGGATCGAGTTCATGTCGACGCCCTTTGC GCCTTGGGCGGTCGATATGCTGCTGGGCCTGGGAATGCGGCGGATCAAGATCGCCTCGGGCGAAATTGTCAACAAACCGC TGATTGACAAGGTTGCAGGCTCGGGTCGGCCCATCATCCTATCGACCGGCATGGCCGAGATGGCGGAGGTCGTGAGGGCG GTCGACTGGATACGCACGGCGCAAAGCGCGGCAGGCATCGCAATGTCACCGGGAGACCTCGTCGTCCTTCACTGCACCTC CGAATATCCGGCGCCGGCCGCCAGCGTGAATCTGCGTGCCATGGATACGCTGGCTGCGGCGCTCGATGTGCCGGTCGGCT ATTCGGATCACAGCCTGGGCATAGAGATTGCGGTCGCGGCGGTCGCGCGTGGCGCGGCGGTGATCGAAAAGCATTTTACC GAAAACAGCCGCGATCACGGCCCCGATCACGCGGCGTCGCTGGAACCGGCGCAACTGCGCGCGATGGTCGATGCCATTCG CAATGTCGAAGTTGCGCTTGGCGATGGCGTAAAGCGGCCCGCGCCGCTCGAGCTTCCGACGCGCGCGCTGGTTCGTCGCA GCGCATTTGCGCTGACCGACATCAATAGGGGTGACAGGCTCGACGCCACGACCATCGCCTTTCTGCGTCCCGGCGACGGC ATCGGTCCCGAACGGGCGGACTGGCTCTTTGCGCGCACGGCGGCGCGCGACATCGCGCGGGGCAGCAAGCTGTGCGAGGA TGATATCGGGTGA
Upstream 100 bases:
>100_bases CGAAAGCCGAAGAGATTGCGGACGCCATGCTGTTTCTCGCCAGCGATGGCGCGTCCTACATCAATGGCCAGAACATCGTG GTTGACGGAGGGCTGACGAC
Downstream 100 bases:
>100_bases CCAGTCCGAAACGCATCGTCTATCTGACCGGAACGCGGGCCGACTTCGGGCTGATGCTTCCTACCCTCCGCGCAATCGAT CGTTCGCCGCACCTTGAACT
Product: N-acylneuraminate-9-phosphate synthase
Products: phosphate; N-acetylneuraminate
Alternate protein names: NA
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MVSGERSVERTFVIAEAGVNHDGSLDKALRLVDIAVEAGADAVKFQTFRTDEVVTPDAAKAAYQQRQTGAGTQYEMIRAL ELDDAAHERLARHCAERGIEFMSTPFAPWAVDMLLGLGMRRIKIASGEIVNKPLIDKVAGSGRPIILSTGMAEMAEVVRA VDWIRTAQSAAGIAMSPGDLVVLHCTSEYPAPAASVNLRAMDTLAAALDVPVGYSDHSLGIEIAVAAVARGAAVIEKHFT ENSRDHGPDHAASLEPAQLRAMVDAIRNVEVALGDGVKRPAPLELPTRALVRRSAFALTDINRGDRLDATTIAFLRPGDG IGPERADWLFARTAARDIARGSKLCEDDIG
Sequences:
>Translated_350_residues MVSGERSVERTFVIAEAGVNHDGSLDKALRLVDIAVEAGADAVKFQTFRTDEVVTPDAAKAAYQQRQTGAGTQYEMIRAL ELDDAAHERLARHCAERGIEFMSTPFAPWAVDMLLGLGMRRIKIASGEIVNKPLIDKVAGSGRPIILSTGMAEMAEVVRA VDWIRTAQSAAGIAMSPGDLVVLHCTSEYPAPAASVNLRAMDTLAAALDVPVGYSDHSLGIEIAVAAVARGAAVIEKHFT ENSRDHGPDHAASLEPAQLRAMVDAIRNVEVALGDGVKRPAPLELPTRALVRRSAFALTDINRGDRLDATTIAFLRPGDG IGPERADWLFARTAARDIARGSKLCEDDIG >Mature_350_residues MVSGERSVERTFVIAEAGVNHDGSLDKALRLVDIAVEAGADAVKFQTFRTDEVVTPDAAKAAYQQRQTGAGTQYEMIRAL ELDDAAHERLARHCAERGIEFMSTPFAPWAVDMLLGLGMRRIKIASGEIVNKPLIDKVAGSGRPIILSTGMAEMAEVVRA VDWIRTAQSAAGIAMSPGDLVVLHCTSEYPAPAASVNLRAMDTLAAALDVPVGYSDHSLGIEIAVAAVARGAAVIEKHFT ENSRDHGPDHAASLEPAQLRAMVDAIRNVEVALGDGVKRPAPLELPTRALVRRSAFALTDINRGDRLDATTIAFLRPGDG IGPERADWLFARTAARDIARGSKLCEDDIG
Specific function: Unknown
COG id: COG2089
COG function: function code M; Sialic acid synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis spsE [H]
Homologues:
Organism=Homo sapiens, GI12056473, Length=317, Percent_Identity=35.3312302839117, Blast_Score=179, Evalue=3e-45, Organism=Drosophila melanogaster, GI21357081, Length=338, Percent_Identity=30.7692307692308, Blast_Score=157, Evalue=1e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006190 - InterPro: IPR013785 - InterPro: IPR013132 - InterPro: IPR013974 [H]
Pfam domain/function: PF03102 NeuB; PF08666 SAF [H]
EC number: 2.5.1.56
Molecular weight: Translated: 37378; Mature: 37378
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS50844 AFP_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSGERSVERTFVIAEAGVNHDGSLDKALRLVDIAVEAGADAVKFQTFRTDEVVTPDAAK CCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH AAYQQRQTGAGTQYEMIRALELDDAAHERLARHCAERGIEFMSTPFAPWAVDMLLGLGMR HHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCC RIKIASGEIVNKPLIDKVAGSGRPIILSTGMAEMAEVVRAVDWIRTAQSAAGIAMSPGDL EEEECCCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCEECCCCE VVLHCTSEYPAPAASVNLRAMDTLAAALDVPVGYSDHSLGIEIAVAAVARGAAVIEKHFT EEEEECCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC ENSRDHGPDHAASLEPAQLRAMVDAIRNVEVALGDGVKRPAPLELPTRALVRRSAFALTD CCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHEEE INRGDRLDATTIAFLRPGDGIGPERADWLFARTAARDIARGSKLCEDDIG CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCC >Mature Secondary Structure MVSGERSVERTFVIAEAGVNHDGSLDKALRLVDIAVEAGADAVKFQTFRTDEVVTPDAAK CCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHH AAYQQRQTGAGTQYEMIRALELDDAAHERLARHCAERGIEFMSTPFAPWAVDMLLGLGMR HHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCC RIKIASGEIVNKPLIDKVAGSGRPIILSTGMAEMAEVVRAVDWIRTAQSAAGIAMSPGDL EEEECCCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCEECCCCE VVLHCTSEYPAPAASVNLRAMDTLAAALDVPVGYSDHSLGIEIAVAAVARGAAVIEKHFT EEEEECCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC ENSRDHGPDHAASLEPAQLRAMVDAIRNVEVALGDGVKRPAPLELPTRALVRRSAFALTD CCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHEEE INRGDRLDATTIAFLRPGDGIGPERADWLFARTAARDIARGSKLCEDDIG CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: phosphoenolpyruvate; N-acetyl-D-mannosamine; H2O
Specific reaction: phosphoenolpyruvate + N-acetyl-D-mannosamine + H2O = phosphate + N-acetylneuraminate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]