| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is epsM [H]
Identifier: 103487059
GI number: 103487059
Start: 1647074
End: 1647727
Strand: Reverse
Name: epsM [H]
Synonym: Sala_1574
Alternate gene names: 103487059
Gene position: 1647727-1647074 (Counterclockwise)
Preceding gene: 103487060
Following gene: 103487058
Centisome position: 49.26
GC content: 64.53
Gene sequence:
>654_bases GTGGCTGCACCAAAGATCATCATTGTCGCAACAGGGGGGCTGGGCCGCGAGGCGCTCTGGGCTGCGCGCGAATCGCGCGA GGGCTGGGACGTGGCGGGCTTTCTGGACGATGATGAAGCGTTGCAGGGAGGTTCGGTCTGCGATGTTCCGGTGCTTGGCA GGGTCGACGACTGGCCCCGCTTCGCCGACCATCATTTCCTGGTCGCCATTGGCGCCCCGCGGTCACGACAGGCCGTGGTT CGTCGCATGATGGCAGCCGGAAATCCCCGCTTCGGCACTGTGGTGCATCGCAGCGCCGCCCTGTCCGGCTATGTGTCGAT CGGCGAGGGCAGTCTCATCTGCGCGAATGTGTCCATCACGACGCAGATAAGGATTGGGCGGCATGTGATCATAAATCTGA ACACCACGGTTGGGCATGACACCGAACTGGGCGATTTCTGTACCCTGGCGCCGCTGGTCGCCTGTTCGGGGGCGGTCACG GCGGGTGCGGGGGTCGAAATCGGAACGGGGGCTTGCATCCGGCAGGGGCTGATGCTGGGGCAGGGGTGCATGATCGGCAT GGGAAGCACGCTGACCAAGGATGTTCCCGCCAACAGCCTGTGGCTCGGAAACCCCGCGACCGACCGCCGACCACTCGACG AGTTCCTGTTGTGA
Upstream 100 bases:
>100_bases GATCCGCATGCCGACATCAGAATTTGCGAAATACTGGAAAAGACCGATTTTTCGGCTTCCGCACTGCGCATGAAGACCAT TTCATACTAGGGGTTCGTCA
Downstream 100 bases:
>100_bases GTGGTCCCCAACGACAGGTCGACGGTCTGCTGCTGCAAAGCGGTACGCTCCTGCGCGATGCCCTGGGCCGCCTGAACGAA ACGGGGCTGGGCATTCTGTT
Product: putative serine O-acetyltransferase
Products: CoA; aacetyl-beta-D-galactoside [C]
Alternate protein names: NA
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MAAPKIIIVATGGLGREALWAARESREGWDVAGFLDDDEALQGGSVCDVPVLGRVDDWPRFADHHFLVAIGAPRSRQAVV RRMMAAGNPRFGTVVHRSAALSGYVSIGEGSLICANVSITTQIRIGRHVIINLNTTVGHDTELGDFCTLAPLVACSGAVT AGAGVEIGTGACIRQGLMLGQGCMIGMGSTLTKDVPANSLWLGNPATDRRPLDEFLL
Sequences:
>Translated_217_residues MAAPKIIIVATGGLGREALWAARESREGWDVAGFLDDDEALQGGSVCDVPVLGRVDDWPRFADHHFLVAIGAPRSRQAVV RRMMAAGNPRFGTVVHRSAALSGYVSIGEGSLICANVSITTQIRIGRHVIINLNTTVGHDTELGDFCTLAPLVACSGAVT AGAGVEIGTGACIRQGLMLGQGCMIGMGSTLTKDVPANSLWLGNPATDRRPLDEFLL >Mature_216_residues AAPKIIIVATGGLGREALWAARESREGWDVAGFLDDDEALQGGSVCDVPVLGRVDDWPRFADHHFLVAIGAPRSRQAVVR RMMAAGNPRFGTVVHRSAALSGYVSIGEGSLICANVSITTQIRIGRHVIINLNTTVGHDTELGDFCTLAPLVACSGAVTA GAGVEIGTGACIRQGLMLGQGCMIGMGSTLTKDVPANSLWLGNPATDRRPLDEFLL
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: COG0110
COG function: function code R; Acetyltransferase (isoleucine patch superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018357 - InterPro: IPR013817 - InterPro: IPR020019 - InterPro: IPR011004 [H]
Pfam domain/function: NA
EC number: 2.3.1.18 [C]
Molecular weight: Translated: 22762; Mature: 22631
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPKIIIVATGGLGREALWAARESREGWDVAGFLDDDEALQGGSVCDVPVLGRVDDWPR CCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHCCCCEECCCCCCCCCCCCC FADHHFLVAIGAPRSRQAVVRRMMAAGNPRFGTVVHRSAALSGYVSIGEGSLICANVSIT CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHEEEEEECCCCEEEEECEEE TQIRIGRHVIINLNTTVGHDTELGDFCTLAPLVACSGAVTAGAGVEIGTGACIRQGLMLG EEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEECCCCEEECCCHHHHHHHHHC QGCMIGMGSTLTKDVPANSLWLGNPATDRRPLDEFLL CCEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHCC >Mature Secondary Structure AAPKIIIVATGGLGREALWAARESREGWDVAGFLDDDEALQGGSVCDVPVLGRVDDWPR CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHCCCCEECCCCCCCCCCCCC FADHHFLVAIGAPRSRQAVVRRMMAAGNPRFGTVVHRSAALSGYVSIGEGSLICANVSIT CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHEEEEEECCCCEEEEECEEE TQIRIGRHVIINLNTTVGHDTELGDFCTLAPLVACSGAVTAGAGVEIGTGACIRQGLMLG EEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEECCCCEEECCCHHHHHHHHHC QGCMIGMGSTLTKDVPANSLWLGNPATDRRPLDEFLL CCEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: MgSO4; Mn2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 1500 {isopropyl} 1200 {isopropyl} 770 {isopropyl} 360 {isopropyl} 0.18 {acetyl-CoA}} 0.049 {acetyl-CoA}} 0.045 {acetyl-CoA}} 0.04 {acetyl-CoA}} [C]
Substrates: Acetyl-CoA; a beta-D-galactoside [C]
Specific reaction: Acetyl-CoA + a beta-D-galactoside = CoA + aacetyl-beta-D-galactoside [C]
General reaction: Acyl group transfer [C]
Inhibitor: 1, 10-Phenanthroline; Acetyl-CoA; Co2+; CoA; Cu2+; MgSO4; Mn2+; p-Chloromercuribenzoate; Zn2+ [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]