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The map label for this gene is ccmH [H]

Identifier: 103486999

GI number: 103486999

Start: 1581309

End: 1581740

Strand: Reverse

Name: ccmH [H]

Synonym: Sala_1514

Alternate gene names: 103486999

Gene position: 1581740-1581309 (Counterclockwise)

Preceding gene: 103487000

Following gene: 103486998

Centisome position: 47.28

GC content: 65.51

Gene sequence:

>432_bases
ATGAGCGTGCGGGTGGCTCTCCTTTGCCTGCTCGGCGCGCTGGTCTTGCCGGTAGCGGCGCAGGACCGGCTGCCGCCCGC
GCCCTATGCCTATCAGCAGCTTAATGACCCTGCGAAGGAAGCGCGTGCCAAGGCTTTGATGGAAGAACTGCGCTGTCTGG
TCTGTCAGGGCCAGTCGATTGCCGATTCTGATGCGCCGCTGGCGGGCGACATGCGGCACGAGGTGCGCAGCAAGATCGCG
GCGGGCGAAAGCCCGGACGAGATCAAGGCGTGGCTCGTCGCGCGTTATGGAAATTGGGTGACTTATGATCCGCCGTTCGA
CGGTGCGACAGCGCTGTTGTGGCTGGGGCCGCTGTTGTTCCTCGCGATCGGCGGCTGGCTGGCGTTCGGCCGCTTTCGCC
GCGGCGGTGACGAGGAGGAGGACAAGACGTGA

Upstream 100 bases:

>100_bases
CCTTCCTCGTCGACGGCAAGGGCGTCATCCGCGAGCAGATACAGGGCGTGATCCTCGCCGATCAGGTACCCGAAATCGTT
GCGAAGATCGAGGCGATGAA

Downstream 100 bases:

>100_bases
CGTGGTTCTGGGTCATGGTCGCCGCCGCGCTGACGATCGGCGGTATTTTCTGGTTGGGTCGCTTGCCCGCCGCCGCCCGG
CCGCTGGCCGGTGCCGCGGT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSVRVALLCLLGALVLPVAAQDRLPPAPYAYQQLNDPAKEARAKALMEELRCLVCQGQSIADSDAPLAGDMRHEVRSKIA
AGESPDEIKAWLVARYGNWVTYDPPFDGATALLWLGPLLFLAIGGWLAFGRFRRGGDEEEDKT

Sequences:

>Translated_143_residues
MSVRVALLCLLGALVLPVAAQDRLPPAPYAYQQLNDPAKEARAKALMEELRCLVCQGQSIADSDAPLAGDMRHEVRSKIA
AGESPDEIKAWLVARYGNWVTYDPPFDGATALLWLGPLLFLAIGGWLAFGRFRRGGDEEEDKT
>Mature_142_residues
SVRVALLCLLGALVLPVAAQDRLPPAPYAYQQLNDPAKEARAKALMEELRCLVCQGQSIADSDAPLAGDMRHEVRSKIAA
GESPDEIKAWLVARYGNWVTYDPPFDGATALLWLGPLLFLAIGGWLAFGRFRRGGDEEEDKT

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=121, Percent_Identity=42.9752066115703, Blast_Score=102, Evalue=9e-24,
Organism=Escherichia coli, GI1790512, Length=78, Percent_Identity=41.025641025641, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 15625; Mature: 15494

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRVALLCLLGALVLPVAAQDRLPPAPYAYQQLNDPAKEARAKALMEELRCLVCQGQSI
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
ADSDAPLAGDMRHEVRSKIAAGESPDEIKAWLVARYGNWVTYDPPFDGATALLWLGPLLF
CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
LAIGGWLAFGRFRRGGDEEEDKT
HHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SVRVALLCLLGALVLPVAAQDRLPPAPYAYQQLNDPAKEARAKALMEELRCLVCQGQSI
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
ADSDAPLAGDMRHEVRSKIAAGESPDEIKAWLVARYGNWVTYDPPFDGATALLWLGPLLF
CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
LAIGGWLAFGRFRRGGDEEEDKT
HHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]