| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486969
Identifier: 103486969
GI number: 103486969
Start: 1541932
End: 1542363
Strand: Reverse
Name: 103486969
Synonym: Sala_1484
Alternate gene names: NA
Gene position: 1542363-1541932 (Counterclockwise)
Preceding gene: 103486970
Following gene: 103486968
Centisome position: 46.11
GC content: 61.57
Gene sequence:
>432_bases ATGCGTGTGATGGTGTTCGTGAAGGCGACCGAGGACAGCGAAAAGGGTCTGCCGCCAACCGAGGAAATGACCGCGATGTT CGAGGCGATGGGCAAGTTCAACGAGGAACTCGTCAACGCCGGGGTGATGGTCGCGGGCGACGGGCTGAAGCCCTCCTCGT TCGGCAAGCGCATTCATTTCGACGGTCCGAACCGCACGGTGACCGACGGTCCTTTCGCCGAAGCGCGCGAACTGGTCGCC GGTTACTGGATCTGGGAAGTCAAGGACATGGACGAAGCGGTCGCCTGGGCCAAACGCTGCCCCAACCCGATGATGGGACC GAGCGATCTGGAAATTCGGCCCTTCTATGAAATGGAGGATTTCGGCGACGCGGTGACCCCCGAGATCGCGGCGCGCGAAG AACGGCTGCGCGATCAACTGGCGAACGAATAA
Upstream 100 bases:
>100_bases CCCGACGCGCCGCGGATTTATTCGACTGTCGATTCTGACCGGGTTCGTTCGTCGTCAGCATGAGAGGCCGTTGTTGGCCT CGGTAACAAGGAGATGGCAA
Downstream 100 bases:
>100_bases GCCGTTCAGCCCTCTGCCATGCTTGCCTCGTCGGTGAACTTCGCGGACAAGACGGACATGGCAATGGAAGACATCCATAG GGCAATCGAGGCGGTTTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: YCII-Related Protein; DGPF Domain-Containing Protein; YCII-Like Protein; YCII-Related; Dgpfaetke; DGPFAETKE Domain-Containing Protein; Dgpfaetke Family Protein; DGPF Domain-Containing; DGPF Protein; Histidine Kinase; DGPF Domain Family; DGPF Domain Protein; Dgpfaetke-Domain Containing Protein; Dgpfaetke Domain; Dgpf Family Protein; Transcription Regulation Protein; Dgpfaetke Domain-Containing Protein; Glutathione S-Transferase; Dgpf Domain-Containing Protein
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHFDGPNRTVTDGPFAEARELVA GYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMEDFGDAVTPEIAAREERLRDQLANE
Sequences:
>Translated_143_residues MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHFDGPNRTVTDGPFAEARELVA GYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMEDFGDAVTPEIAAREERLRDQLANE >Mature_143_residues MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHFDGPNRTVTDGPFAEARELVA GYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMEDFGDAVTPEIAAREERLRDQLANE
Specific function: Unknown
COG id: COG3795
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16064; Mature: 16064
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 7.0 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 7.0 %Met (Mature Protein) 7.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHF CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEE DGPNRTVTDGPFAEARELVAGYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMED CCCCCCCCCCCHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHH FGDAVTPEIAAREERLRDQLANE CCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRVMVFVKATEDSEKGLPPTEEMTAMFEAMGKFNEELVNAGVMVAGDGLKPSSFGKRIHF CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEE DGPNRTVTDGPFAEARELVAGYWIWEVKDMDEAVAWAKRCPNPMMGPSDLEIRPFYEMED CCCCCCCCCCCHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHH FGDAVTPEIAAREERLRDQLANE CCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA