| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486939
Identifier: 103486939
GI number: 103486939
Start: 1504478
End: 1505446
Strand: Reverse
Name: 103486939
Synonym: Sala_1454
Alternate gene names: NA
Gene position: 1505446-1504478 (Counterclockwise)
Preceding gene: 103486940
Following gene: 103486938
Centisome position: 45.0
GC content: 67.29
Gene sequence:
>969_bases ATGCGATATAAGGTACATACGGCTTCGGGGCTTCGATCCACTGGGCCCCTGAAGGCCATGTGGGGCGCGGTGCTGCTCGC GCTGGCAGGGTGCGCGCCCGGCCACGCGGTCGCCAGCACCGTCCCGCATGGTGACGCCGCCGCGGGGCAGACCGACCCCA GGGCTGCGCCGCGAACGATCCTGTTCATCGGCAACAGCTTTACGCAGGGCGCGCATTCGGCGGCGCGCAACTGGCGTGCG GGATCAGTCACCGACCTCAATAACGCCGGCTATGGCGGCGTACCGGCGCTGTTCAAGCTGTTCACCGAGCAGGCGGGGCT GGACTATCATGTCAGCCTCGAAACGCAGGGCGGCAAGTCGCTGGGCTTTCATTATGACGAGCGGCGCCAGCGGTTCGACC GCGCGTGGGACGTTGTCGTGCTGCAGGAGTTCAGCACGCTCGACCGCGACCGGCCCGGTGATCCCGGCAACTACATGCGC GACGTCGACCGGCTTGCCAGGCTGTTCAAGGCGCGTAATCCCGCGGTCGACATCCGCCTGATGGCGAGCTGGACGCGCGC CGACCAGACCTACAAGCCCACGGGGCATTGGTATGGTCGGCCAGTGACCGCGATGGCGGAGGATCTGCGCGCCGCGGCCG ACAAGGTGCGCGCCGCCAATCCCGCGGTCACCGGCATCCTGCCGGTGGGGCAGGCGTGGAACCGCGCGATGACAGAGGGG ATCGCCGATGCCAATCCCTATGACGGCATCGGCTATGGCCAGCTCGATCTGTGGGCCTATGACCATTATCACGCCAGCGT CGCGGGCTATTATCTTTCGGCGCTGGTGACCTTCGGCGCGGTTACCGGCGTCGATCCGACGGCGCTGGGACCGGATGAGA AGGGTGCGGACGAACTGGGCCTTTCCAACGCTCAGGCCACGGCGTTACAGCGTGTCGCGCGCGATACGCTGCGAAGCGCG GGCAGCTGA
Upstream 100 bases:
>100_bases ACAGCGCGCCGCCGCTTGTCGATGAAAGCCTGGGCTATTACCCCGAATATCATTCGGTTAAGCCGCGGGAGTTCTATGTC CAGCTTCGGGGCAGCTTTTG
Downstream 100 bases:
>100_bases CGCGCGCCGACAAGCCATTTGCCTATGCTGTGTTGGGGTTGTAATACGGCCTCAAGCATGACCTGGTTCCGCAAACCCGA AGGCTCCGATCCCACCCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 322; Mature: 322
Protein sequence:
>322_residues MRYKVHTASGLRSTGPLKAMWGAVLLALAGCAPGHAVASTVPHGDAAAGQTDPRAAPRTILFIGNSFTQGAHSAARNWRA GSVTDLNNAGYGGVPALFKLFTEQAGLDYHVSLETQGGKSLGFHYDERRQRFDRAWDVVVLQEFSTLDRDRPGDPGNYMR DVDRLARLFKARNPAVDIRLMASWTRADQTYKPTGHWYGRPVTAMAEDLRAAADKVRAANPAVTGILPVGQAWNRAMTEG IADANPYDGIGYGQLDLWAYDHYHASVAGYYLSALVTFGAVTGVDPTALGPDEKGADELGLSNAQATALQRVARDTLRSA GS
Sequences:
>Translated_322_residues MRYKVHTASGLRSTGPLKAMWGAVLLALAGCAPGHAVASTVPHGDAAAGQTDPRAAPRTILFIGNSFTQGAHSAARNWRA GSVTDLNNAGYGGVPALFKLFTEQAGLDYHVSLETQGGKSLGFHYDERRQRFDRAWDVVVLQEFSTLDRDRPGDPGNYMR DVDRLARLFKARNPAVDIRLMASWTRADQTYKPTGHWYGRPVTAMAEDLRAAADKVRAANPAVTGILPVGQAWNRAMTEG IADANPYDGIGYGQLDLWAYDHYHASVAGYYLSALVTFGAVTGVDPTALGPDEKGADELGLSNAQATALQRVARDTLRSA GS >Mature_322_residues MRYKVHTASGLRSTGPLKAMWGAVLLALAGCAPGHAVASTVPHGDAAAGQTDPRAAPRTILFIGNSFTQGAHSAARNWRA GSVTDLNNAGYGGVPALFKLFTEQAGLDYHVSLETQGGKSLGFHYDERRQRFDRAWDVVVLQEFSTLDRDRPGDPGNYMR DVDRLARLFKARNPAVDIRLMASWTRADQTYKPTGHWYGRPVTAMAEDLRAAADKVRAANPAVTGILPVGQAWNRAMTEG IADANPYDGIGYGQLDLWAYDHYHASVAGYYLSALVTFGAVTGVDPTALGPDEKGADELGLSNAQATALQRVARDTLRSA GS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34574; Mature: 34574
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYKVHTASGLRSTGPLKAMWGAVLLALAGCAPGHAVASTVPHGDAAAGQTDPRAAPRTI CCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEE LFIGNSFTQGAHSAARNWRAGSVTDLNNAGYGGVPALFKLFTEQAGLDYHVSLETQGGKS EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC LGFHYDERRQRFDRAWDVVVLQEFSTLDRDRPGDPGNYMRDVDRLARLFKARNPAVDIRL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE MASWTRADQTYKPTGHWYGRPVTAMAEDLRAAADKVRAANPAVTGILPVGQAWNRAMTEG EEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC IADANPYDGIGYGQLDLWAYDHYHASVAGYYLSALVTFGAVTGVDPTALGPDEKGADELG CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHC LSNAQATALQRVARDTLRSAGS CCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRYKVHTASGLRSTGPLKAMWGAVLLALAGCAPGHAVASTVPHGDAAAGQTDPRAAPRTI CCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEE LFIGNSFTQGAHSAARNWRAGSVTDLNNAGYGGVPALFKLFTEQAGLDYHVSLETQGGKS EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC LGFHYDERRQRFDRAWDVVVLQEFSTLDRDRPGDPGNYMRDVDRLARLFKARNPAVDIRL CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE MASWTRADQTYKPTGHWYGRPVTAMAEDLRAAADKVRAANPAVTGILPVGQAWNRAMTEG EEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC IADANPYDGIGYGQLDLWAYDHYHASVAGYYLSALVTFGAVTGVDPTALGPDEKGADELG CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHC LSNAQATALQRVARDTLRSAGS CCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA