| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486931
Identifier: 103486931
GI number: 103486931
Start: 1493113
End: 1494459
Strand: Reverse
Name: 103486931
Synonym: Sala_1446
Alternate gene names: NA
Gene position: 1494459-1493113 (Counterclockwise)
Preceding gene: 103486932
Following gene: 103486930
Centisome position: 44.68
GC content: 67.41
Gene sequence:
>1347_bases GTGGCCAGTTCCGCCCTGCCATCGGCTATATCCGCGCCTCGCCTGTTGGCGCTGCGGCCGCGGGTCGTGGCGGCCTATGC CGCGACCGCGGGGCCGACGGCGATGCTCGCGCTGCCTTTCAGCGTCTATCTGCCGCCCTATATCGCCGAAGGCGGGGTGA TTCCGGTGGCGCTGGTCGGGCTGCTCTTTTCGCTCACGACGATCTGGGACGGGGTGGTCGACCCGCTGATCGGAACGATG GTGGACCGCGTTCGCACCGGGCTTGGCGCGCACCGCCGCTGGATGCTGATCGCGCTGGCGCCGCTCGGCTTGCTGCTGCT CGCGCTGGTCATGGTAGGCGACCGCCTGTCGTTCGCGGCGCTGTTCCTGATGATGGTGCTCTTCTACTCCAGCTTCAGCC TGTACGAGGTTGCCCAGCTGTCGTGGGGGTCGGCGCTCGTGCGCACTCCCGCCGACAGCGCACTGCTCTACGGAATGCGC GACTGGTTCGCGAAGATCGCGCTGATCCTGGCCTTTGCCGCGCCCGCAGCGGCACAATTGCTGATGCCGTCGATCAGCCT GCAGGGACGGATCATCGCCTATGCAAGCCTCTTCCTGCTTCTGGCGCCCGTCGCGATTTATGCGATCGCGCGTGTCCCGC GGCGCCGCGTCGTCGCCGAGGCGGGGATCGGCTGGCGCCGGGAAATCCGCGCCTCGTTCGGCTTTCCGCCGCTGATGCTG CTCTTTGGCGTGCAGTTCCTCAACAGTTTTGCGTTCGGATCGCTCACCTCGCTTTTCGTCTTTTTTGCCGATGCCGTGCT GGGACTCGACGCGCAGAGCGCGGTGCTCCTGTTTGCCAGCTTTGTCGGCGGCGCGCTCGCGTCGCCGGTCTGGACTTTTC TCGCGCGGCGCTTCGGCAAGCCACCCATGATGATCGGCATGGCGTTGCTGATCTCGACGCTGCTCGTCGCCACGCTGGGG CAGACGCCGCGTGGGCTTGCGCAGGCGACACTTTTTTCGTTGACGCTCGGGACGGGCTTCGTCGGGCTGTTGTTCATCCA CTCGATGCTGGCCGACCTGATCCCGCGCGACGCCGAGCGCTGCGGCCGGTCGCGCGCGGCCTTTCTGTTCGCGCTCCTGA ACCTGATGCAGAAGTTCGGCGTCGCGGCGGCGATCGCCGTCAGCTATGCGATGCTCGACCTTGTCGGTTTCGATCCGCGG GACGGCGCTGTGGCGGCGCGCGCGCTGCATCTCCTCTTCGCGCTCCAGCCGACCGCCAGCTGGGCGGCGATGGTGGTCCT GCTCCTGCTGATGCGCCGCGACTTCGCCCGCGACCATCCGCTTGCAATCGCCGCAGCGCGCAAGTAA
Upstream 100 bases:
>100_bases CGACCGTTCATATCGCATTTCAGGATCGGCCAGATTCATTGACATAATTGTCAATAGCTGAAAGCATCGCGCTTCGTGCC TTCCTGGGGAGCGACGCGAC
Downstream 100 bases:
>100_bases AGGCCGCATTCATTCGGACAGATGCGCCGTTTTCCTTCCGCCTTTCGCCGACAAGCTCGGGGAGGGTGGACGGACTATTG CCCGAAGCGCGCTTGACGCG
Product: Na+/melibiose symporter and related transporters-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVGLLFSLTTIWDGVVDPLIGTM VDRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAALFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMR DWFAKIALILAFAAPAAAQLLMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLML LFGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGKPPMMIGMALLISTLLVATLG QTPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAERCGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPR DGAVAARALHLLFALQPTASWAAMVVLLLLMRRDFARDHPLAIAAARK
Sequences:
>Translated_448_residues MASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVGLLFSLTTIWDGVVDPLIGTM VDRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAALFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMR DWFAKIALILAFAAPAAAQLLMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLML LFGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGKPPMMIGMALLISTLLVATLG QTPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAERCGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPR DGAVAARALHLLFALQPTASWAAMVVLLLLMRRDFARDHPLAIAAARK >Mature_447_residues ASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVGLLFSLTTIWDGVVDPLIGTMV DRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAALFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMRD WFAKIALILAFAAPAAAQLLMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLMLL FGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGKPPMMIGMALLISTLLVATLGQ TPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAERCGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPRD GAVAARALHLLFALQPTASWAAMVVLLLLMRRDFARDHPLAIAAARK
Specific function: Unknown
COG id: COG2211
COG function: function code G; Na+/melibiose symporter and related transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47931; Mature: 47800
Theoretical pI: Translated: 11.25; Mature: 11.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVG CCCCCCCCHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCHHHHCCCHHCCCCCHHHHHHH LLFSLTTIWDGVVDPLIGTMVDRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMRDWFAKIALILAFAAPAAAQL HHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLML HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCHHHH LFGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PPMMIGMALLISTLLVATLGQTPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAER CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH CGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPRDGAVAARALHLLFALQPTAS HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH WAAMVVLLLLMRRDFARDHPLAIAAARK HHHHHHHHHHHHHHHCCCCCEEEEECCC >Mature Secondary Structure ASSALPSAISAPRLLALRPRVVAAYAATAGPTAMLALPFSVYLPPYIAEGGVIPVALVG CCCCCCCHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCHHHHCCCHHCCCCCHHHHHHH LLFSLTTIWDGVVDPLIGTMVDRVRTGLGAHRRWMLIALAPLGLLLLALVMVGDRLSFAA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LFLMMVLFYSSFSLYEVAQLSWGSALVRTPADSALLYGMRDWFAKIALILAFAAPAAAQL HHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LMPSISLQGRIIAYASLFLLLAPVAIYAIARVPRRRVVAEAGIGWRREIRASFGFPPLML HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCHHHH LFGVQFLNSFAFGSLTSLFVFFADAVLGLDAQSAVLLFASFVGGALASPVWTFLARRFGK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PPMMIGMALLISTLLVATLGQTPRGLAQATLFSLTLGTGFVGLLFIHSMLADLIPRDAER CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH CGRSRAAFLFALLNLMQKFGVAAAIAVSYAMLDLVGFDPRDGAVAARALHLLFALQPTAS HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH WAAMVVLLLLMRRDFARDHPLAIAAARK HHHHHHHHHHHHHHHCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA