| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486911
Identifier: 103486911
GI number: 103486911
Start: 1476218
End: 1476868
Strand: Reverse
Name: 103486911
Synonym: Sala_1425
Alternate gene names: NA
Gene position: 1476868-1476218 (Counterclockwise)
Preceding gene: 103486912
Following gene: 103486910
Centisome position: 44.15
GC content: 72.66
Gene sequence:
>651_bases ATGACAGGTGCAGCCACGGCTGCTATCATCGTGTCGATGCGCGTCCTGCTGATCTTGTCGGCGCTCGCCGCCGCTTTCGC GTTCTCCGCGCCGCTGGCGGCGGCGCCCGAATCGCTGTTGCCGACCGACGCCGAAACCGAGGCGCCGCACACGCCCGCAC GGCTCGCGCCGCTTGCCATCGATTCGGCATGGACGCCGCGCTTTGCCGCCGCAGCGGATGAACTGGCGGCGGCGCTACGC TCACGCGACGAGGCGCGCTGGGCGCCGCTGCTGGGCGGCCAGTGGCTCGCGCCCGCCGACCGCGCGCGCGTACGGGCGAT GCTCGCCGACCATGACAGCGTGTTCGGCGAAGCCTTGTGGAGCCTGGCGACCCCGCACCGCGCAATTTTCGGCTGGAGCG CACCTGCCTCGCTCAGCGCTGCCGAGCGCGCGGCGATCGAGGCGGGGCAGGAGGCCGAGGCGCTGGTGTGCTGGTCGGCG CGCGGCGAAGGGGCGTGGCCGGTCACTGCGGAGGAGGCCGACAACCGGCCCGGACGCCCCCATGCCTGCGTGCGCATCGC CTACAGTATTCGTGGCGAAGTCCCGAAGTGGCGCGCCTTCGTCGAGCAGGGTCGTGACGCGCCCGCCGAAACGACAGCGC AGCGCGACTAG
Upstream 100 bases:
>100_bases CCTATCCCGACCTTGGCTGGTCGGTCGAGCATCGGCGGGTCGAGGCGATCGACGCCGTCGCCGCGCCGCAGTGGATGTGC GAGGCGCTCCGCGTCGGTTC
Downstream 100 bases:
>100_bases GCTTAACCAATCTCCAACCCAGATATGCAACAAGGTGCGCCATGATCGGGCGGTTTCTTGGGTTAGCGGTGGTCATCACC GCGGTGTCGGTCGGCGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MTGAATAAIIVSMRVLLILSALAAAFAFSAPLAAAPESLLPTDAETEAPHTPARLAPLAIDSAWTPRFAAAADELAAALR SRDEARWAPLLGGQWLAPADRARVRAMLADHDSVFGEALWSLATPHRAIFGWSAPASLSAAERAAIEAGQEAEALVCWSA RGEGAWPVTAEEADNRPGRPHACVRIAYSIRGEVPKWRAFVEQGRDAPAETTAQRD
Sequences:
>Translated_216_residues MTGAATAAIIVSMRVLLILSALAAAFAFSAPLAAAPESLLPTDAETEAPHTPARLAPLAIDSAWTPRFAAAADELAAALR SRDEARWAPLLGGQWLAPADRARVRAMLADHDSVFGEALWSLATPHRAIFGWSAPASLSAAERAAIEAGQEAEALVCWSA RGEGAWPVTAEEADNRPGRPHACVRIAYSIRGEVPKWRAFVEQGRDAPAETTAQRD >Mature_215_residues TGAATAAIIVSMRVLLILSALAAAFAFSAPLAAAPESLLPTDAETEAPHTPARLAPLAIDSAWTPRFAAAADELAAALRS RDEARWAPLLGGQWLAPADRARVRAMLADHDSVFGEALWSLATPHRAIFGWSAPASLSAAERAAIEAGQEAEALVCWSAR GEGAWPVTAEEADNRPGRPHACVRIAYSIRGEVPKWRAFVEQGRDAPAETTAQRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22823; Mature: 22692
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGAATAAIIVSMRVLLILSALAAAFAFSAPLAAAPESLLPTDAETEAPHTPARLAPLAI CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHCCCCCCCCCCCCCHHHHHEEE DSAWTPRFAAAADELAAALRSRDEARWAPLLGGQWLAPADRARVRAMLADHDSVFGEALW CCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SLATPHRAIFGWSAPASLSAAERAAIEAGQEAEALVCWSARGEGAWPVTAEEADNRPGRP HHCCCCHHEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC HACVRIAYSIRGEVPKWRAFVEQGRDAPAETTAQRD HHHEEEHHHHCCCCHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TGAATAAIIVSMRVLLILSALAAAFAFSAPLAAAPESLLPTDAETEAPHTPARLAPLAI CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHCCCCCCCCCCCCCHHHHHEEE DSAWTPRFAAAADELAAALRSRDEARWAPLLGGQWLAPADRARVRAMLADHDSVFGEALW CCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SLATPHRAIFGWSAPASLSAAERAAIEAGQEAEALVCWSARGEGAWPVTAEEADNRPGRP HHCCCCHHEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC HACVRIAYSIRGEVPKWRAFVEQGRDAPAETTAQRD HHHEEEHHHHCCCCHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA