| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486886
Identifier: 103486886
GI number: 103486886
Start: 1455172
End: 1455567
Strand: Reverse
Name: 103486886
Synonym: Sala_1400
Alternate gene names: NA
Gene position: 1455567-1455172 (Counterclockwise)
Preceding gene: 103486887
Following gene: 103486885
Centisome position: 43.51
GC content: 67.68
Gene sequence:
>396_bases TTGCCCGGCCAAAAGCCAGATCAAAAGGGGCAGCCGCCGGTCGCGCGCGCTGCCCTTTTTGGCCTCTGCCCGCGCTGCGG CGCGCAGACGCTGTTCGACGGGCCGGTCAAGTTCGCTTCGCACTGCCGCGTGTGCGCGCTCGATTATTCGACCTATAATG TCGGTGATGGCCCCGCGGCTTTCCTGACGCTCATCATCGGCGCACTGCTGATCGTCGCGGCGCTGACGCTCGATGCCGTC GCGCGTCCGCCCTTTTGGGTGCATATTCTGCTGTGGGTACCGCTGACCGCCGCCGCGGTCGTCTATGGCCTGCGCGTCGG CAAGGCCGCGCTGCTCGCGATCGAGCATCAGCGGCAGGCGGCCGAGGGGCGCAAGCTGGACGGTCCGCATGACTGA
Upstream 100 bases:
>100_bases GCGGCGTGGTACTGGCACTTCGTCGACGTCGTGTGGCTGTTCCTCTTCATCATCGTCTATGTCTGGGGCGGCTGGGGCGC GCCGGTCGCTGCGCACTAAA
Downstream 100 bases:
>100_bases TCGCGCCGAAGGCGGTGTTTCGGACACGCCGCGGCCGCGCTGGCCGCTGGGCCCGACCCTGCTGGTCCTCATCGCGGTGG CGGTGATGATCGGCCTCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MPGQKPDQKGQPPVARAALFGLCPRCGAQTLFDGPVKFASHCRVCALDYSTYNVGDGPAAFLTLIIGALLIVAALTLDAV ARPPFWVHILLWVPLTAAAVVYGLRVGKAALLAIEHQRQAAEGRKLDGPHD
Sequences:
>Translated_131_residues MPGQKPDQKGQPPVARAALFGLCPRCGAQTLFDGPVKFASHCRVCALDYSTYNVGDGPAAFLTLIIGALLIVAALTLDAV ARPPFWVHILLWVPLTAAAVVYGLRVGKAALLAIEHQRQAAEGRKLDGPHD >Mature_130_residues PGQKPDQKGQPPVARAALFGLCPRCGAQTLFDGPVKFASHCRVCALDYSTYNVGDGPAAFLTLIIGALLIVAALTLDAVA RPPFWVHILLWVPLTAAAVVYGLRVGKAALLAIEHQRQAAEGRKLDGPHD
Specific function: Unknown
COG id: COG5349
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13894; Mature: 13763
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGQKPDQKGQPPVARAALFGLCPRCGAQTLFDGPVKFASHCRVCALDYSTYNVGDGPAA CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCHHHHHHCCCEEEECCCCCCCCCCHHH FLTLIIGALLIVAALTLDAVARPPFWVHILLWVPLTAAAVVYGLRVGKAALLAIEHQRQA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEGRKLDGPHD HCCCCCCCCCC >Mature Secondary Structure PGQKPDQKGQPPVARAALFGLCPRCGAQTLFDGPVKFASHCRVCALDYSTYNVGDGPAA CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCHHHHHHCCCEEEECCCCCCCCCCHHH FLTLIIGALLIVAALTLDAVARPPFWVHILLWVPLTAAAVVYGLRVGKAALLAIEHQRQA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEGRKLDGPHD HCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA