| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486813
Identifier: 103486813
GI number: 103486813
Start: 1384969
End: 1386033
Strand: Direct
Name: 103486813
Synonym: Sala_1327
Alternate gene names: NA
Gene position: 1384969-1386033 (Clockwise)
Preceding gene: 103486812
Following gene: 103486814
Centisome position: 41.4
GC content: 64.41
Gene sequence:
>1065_bases ATGACCAGCAAGCTGAACACCGTGGGTTTCATCGGTCTGGCGGCGATATCGAGTCTCGCCGCCACGTCGGCACTTGCTGC CGGCACGACCGCAGGAACCACGATCACCAATACTGCCACTGTCGATTTTCAGGTCGGTGGCGTCGCCCAGGTGCAACAAT CCGCGTCGGATAATTTCACCGTCGACCGCAAGATCAACCTGCTCGTCGAAGAAGTCGGCACCGTCACCACCAATGTTGTT CCGGGCCAGACCAACGCCGTGACGACGTTTCAGCTCACCAACAGCTCGAACGAAGTGCTCGATTTCGCGCTCGTTGCCTC GCAGATCGCGGGCGGCACTGCCGCGCATGGCGGCACCGACAGCTTCGATGCCACCAATGTTCGTATCTATCGCGACAACA TATCATCGGGAACGGTCGGCAGTTGGGACGCGGCCGACACGCTGATTTCGGGCTATATCGACGAACTCGTTGTCGATACC GCGATCCGGCTGTTCGTCGTCGCCGACATTCCGGCGGCGCTTGCCAACAATGCCGTCGCCGGGGTGACGCTTCGCGCCAC CGCGCGCGAGGGCGGCACCGCGGGCAGCCAGGGCGCGGCGATCACCGAAACCACCGGCGCAAACACCGCGGGCAAGGACA CCGTCTTTGCCGACACCGCGGGCGTCACGGGCGACGCCGGGCGCGACGGATCGCATAGCGACAATGACGATTATACGGTG CAGACGGCGACCCTGACGGTCACCAAGACCAGCCGCGTCATCTCTGACCCGTTCAACAATACGACCAATCCGAAACTGAT TCCGGGCGCCGTTGTCGAATACTGCATCGCGGTGGCCAATTCGGGCAGCGCCGACGCGACCTCGGTCGCGATCAACGATC CCGTGCCGGGACAGCTGAGCTTCAGCGCCGGAACGATCCGGCTGGGCGGCACCGTCACTGCGGGCACATGCAACGCCGAC GGCGCCGTGGGCGGCAGCTATTCGGCGCCCAACGTGTCGGGGACGATCGCGACGATCGCGGCCGGGGCGACGCGCACCCT CGTTTTCCGCGCCACGGTCAACTGA
Upstream 100 bases:
>100_bases CATGTTTCGGGGAATCGTCAAATAGCGACTGCATAATAACCGCTTAACGATTGCCAGCGGTGGGGAATGGGCAATCGAAC CAAACCAAGGAGCTTCAGCT
Downstream 100 bases:
>100_bases CCGCGTAACGGACGGACGCGGCGGCGCCCCGGCTCGACCGGGCGCCGCCGCTTCCTTCGGGGCTGGCATGGCGATCCGCG ATACATATTTCGGCCTTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MTSKLNTVGFIGLAAISSLAATSALAAGTTAGTTITNTATVDFQVGGVAQVQQSASDNFTVDRKINLLVEEVGTVTTNVV PGQTNAVTTFQLTNSSNEVLDFALVASQIAGGTAAHGGTDSFDATNVRIYRDNISSGTVGSWDAADTLISGYIDELVVDT AIRLFVVADIPAALANNAVAGVTLRATAREGGTAGSQGAAITETTGANTAGKDTVFADTAGVTGDAGRDGSHSDNDDYTV QTATLTVTKTSRVISDPFNNTTNPKLIPGAVVEYCIAVANSGSADATSVAINDPVPGQLSFSAGTIRLGGTVTAGTCNAD GAVGGSYSAPNVSGTIATIAAGATRTLVFRATVN
Sequences:
>Translated_354_residues MTSKLNTVGFIGLAAISSLAATSALAAGTTAGTTITNTATVDFQVGGVAQVQQSASDNFTVDRKINLLVEEVGTVTTNVV PGQTNAVTTFQLTNSSNEVLDFALVASQIAGGTAAHGGTDSFDATNVRIYRDNISSGTVGSWDAADTLISGYIDELVVDT AIRLFVVADIPAALANNAVAGVTLRATAREGGTAGSQGAAITETTGANTAGKDTVFADTAGVTGDAGRDGSHSDNDDYTV QTATLTVTKTSRVISDPFNNTTNPKLIPGAVVEYCIAVANSGSADATSVAINDPVPGQLSFSAGTIRLGGTVTAGTCNAD GAVGGSYSAPNVSGTIATIAAGATRTLVFRATVN >Mature_353_residues TSKLNTVGFIGLAAISSLAATSALAAGTTAGTTITNTATVDFQVGGVAQVQQSASDNFTVDRKINLLVEEVGTVTTNVVP GQTNAVTTFQLTNSSNEVLDFALVASQIAGGTAAHGGTDSFDATNVRIYRDNISSGTVGSWDAADTLISGYIDELVVDTA IRLFVVADIPAALANNAVAGVTLRATAREGGTAGSQGAAITETTGANTAGKDTVFADTAGVTGDAGRDGSHSDNDDYTVQ TATLTVTKTSRVISDPFNNTTNPKLIPGAVVEYCIAVANSGSADATSVAINDPVPGQLSFSAGTIRLGGTVTAGTCNADG AVGGSYSAPNVSGTIATIAAGATRTLVFRATVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35312; Mature: 35181
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKLNTVGFIGLAAISSLAATSALAAGTTAGTTITNTATVDFQVGGVAQVQQSASDNFT CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECEEEEEEEECCHHHHHHCCCCCEE VDRKINLLVEEVGTVTTNVVPGQTNAVTTFQLTNSSNEVLDFALVASQIAGGTAAHGGTD EEHHHHHHHHHHCCEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC SFDATNVRIYRDNISSGTVGSWDAADTLISGYIDELVVDTAIRLFVVADIPAALANNAVA CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHCCCEE GVTLRATAREGGTAGSQGAAITETTGANTAGKDTVFADTAGVTGDAGRDGSHSDNDDYTV EEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE QTATLTVTKTSRVISDPFNNTTNPKLIPGAVVEYCIAVANSGSADATSVAINDPVPGQLS EEEEEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEE FSAGTIRLGGTVTAGTCNADGAVGGSYSAPNVSGTIATIAAGATRTLVFRATVN ECCCEEEECCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECC >Mature Secondary Structure TSKLNTVGFIGLAAISSLAATSALAAGTTAGTTITNTATVDFQVGGVAQVQQSASDNFT CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECEEEEEEEECCHHHHHHCCCCCEE VDRKINLLVEEVGTVTTNVVPGQTNAVTTFQLTNSSNEVLDFALVASQIAGGTAAHGGTD EEHHHHHHHHHHCCEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC SFDATNVRIYRDNISSGTVGSWDAADTLISGYIDELVVDTAIRLFVVADIPAALANNAVA CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHCCCEE GVTLRATAREGGTAGSQGAAITETTGANTAGKDTVFADTAGVTGDAGRDGSHSDNDDYTV EEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE QTATLTVTKTSRVISDPFNNTTNPKLIPGAVVEYCIAVANSGSADATSVAINDPVPGQLS EEEEEEEEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEE FSAGTIRLGGTVTAGTCNADGAVGGSYSAPNVSGTIATIAAGATRTLVFRATVN ECCCEEEECCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA