| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486811
Identifier: 103486811
GI number: 103486811
Start: 1383416
End: 1384417
Strand: Direct
Name: 103486811
Synonym: Sala_1325
Alternate gene names: NA
Gene position: 1383416-1384417 (Clockwise)
Preceding gene: 103486809
Following gene: 103486812
Centisome position: 41.36
GC content: 66.37
Gene sequence:
>1002_bases ATGATGATAGCGCCTGTGGGGGGCGCGAAGCATCGGCTTCTTCCCTCTTGTTCATTCATCGCGCTGCTCGCCGCGCTTGC GCTGCCGATGCAGGCAAACGCCGCCGGAACGCGCGCCGGGTCGACGATCAGCAATACCGCGTCCGCCAGTTTCGATACCG GCGGTGGGCCGACGACGATCGACTCGAACCGCGTTGACCTGCTCGTCGACGAACTGCTCGACGTCACCGTCGATTCGGGC AATCCCGCCGACGTGCCGACCACGCCGGGCGCCACCGGACAGGTGCTGACCTTCTCGGTCACCAACAATGGCAATGGCGT TGAGGATTTCGCGCTGAGCACGGTCGCGAATGCGGGCGGCGACGATTACGACCCGGCAGTAACGCAGGTCTATCTCGACA ATGGCGACGGTCTGTTCGATGCCGGAACCGACACGCTCTATATCGCGGGCGTCAACGATCCGACGCTCGATCCCGACGAG AGCACCACGGTGTTCGTCGTGACGACGACGCCCGGCGCGGTCGTCGACGGCAATCGCGGCATCGTCAGCCTCGCCGCGGC GGCAAAGACGGGAACCGGCGCGCCCGGCGACAGTTTTGCCGGTCAGGGCGAAGGCGGCGGCGACGCCGTCGTCGGTTCGA CCGGCGCCGATGGCGAAGATGCCGGCGCCTTCGTCGTTTCGGCCGCGACGGTCACGCTCGTCAAATCGGCCAGCATCACC AATCCGCTCGGCACCGCCGACCCGATCCCCGGGGCGACGATCACTTATACGATCGTCGCCACCGTTGCGGGCAGCGGTTC GGTGAACGGGCTCGCAATCACCGACAATATCCCCGCCGACACCAGCTATATCCCCGGCTCGATCACGCTCGGCGGTAGCG GACTGACCGACGCGGCCGATGCTGATGCGGGCGATTTCAACGGCACGCGGATCAATGTCGCGCTCGGCACCGTCGCTGGC GGCCAGACGCGCACCGTCACCTTCCAGACCCTGATCGACTGA
Upstream 100 bases:
>100_bases CTTTTGGAGCAAATCGCGACTTTCCAAAGACTTCTTAACCAGAAATTACCCTTTTTCGGCGATTGACGGCTTCAAGGACC AACCTTTCGGAGTCAATCTG
Downstream 100 bases:
>100_bases TGGAGATGCCCATGCGCCCCGCCCTCCTGCTTATGCTCGCAGCCGCGCTTCCCGGTCCGGCCTTTGCCGCCAATCAGGTT GCGCTCGACAATCTTGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MMIAPVGGAKHRLLPSCSFIALLAALALPMQANAAGTRAGSTISNTASASFDTGGGPTTIDSNRVDLLVDELLDVTVDSG NPADVPTTPGATGQVLTFSVTNNGNGVEDFALSTVANAGGDDYDPAVTQVYLDNGDGLFDAGTDTLYIAGVNDPTLDPDE STTVFVVTTTPGAVVDGNRGIVSLAAAAKTGTGAPGDSFAGQGEGGGDAVVGSTGADGEDAGAFVVSAATVTLVKSASIT NPLGTADPIPGATITYTIVATVAGSGSVNGLAITDNIPADTSYIPGSITLGGSGLTDAADADAGDFNGTRINVALGTVAG GQTRTVTFQTLID
Sequences:
>Translated_333_residues MMIAPVGGAKHRLLPSCSFIALLAALALPMQANAAGTRAGSTISNTASASFDTGGGPTTIDSNRVDLLVDELLDVTVDSG NPADVPTTPGATGQVLTFSVTNNGNGVEDFALSTVANAGGDDYDPAVTQVYLDNGDGLFDAGTDTLYIAGVNDPTLDPDE STTVFVVTTTPGAVVDGNRGIVSLAAAAKTGTGAPGDSFAGQGEGGGDAVVGSTGADGEDAGAFVVSAATVTLVKSASIT NPLGTADPIPGATITYTIVATVAGSGSVNGLAITDNIPADTSYIPGSITLGGSGLTDAADADAGDFNGTRINVALGTVAG GQTRTVTFQTLID >Mature_333_residues MMIAPVGGAKHRLLPSCSFIALLAALALPMQANAAGTRAGSTISNTASASFDTGGGPTTIDSNRVDLLVDELLDVTVDSG NPADVPTTPGATGQVLTFSVTNNGNGVEDFALSTVANAGGDDYDPAVTQVYLDNGDGLFDAGTDTLYIAGVNDPTLDPDE STTVFVVTTTPGAVVDGNRGIVSLAAAAKTGTGAPGDSFAGQGEGGGDAVVGSTGADGEDAGAFVVSAATVTLVKSASIT NPLGTADPIPGATITYTIVATVAGSGSVNGLAITDNIPADTSYIPGSITLGGSGLTDAADADAGDFNGTRINVALGTVAG GQTRTVTFQTLID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32534; Mature: 32534
Theoretical pI: Translated: 3.54; Mature: 3.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMIAPVGGAKHRLLPSCSFIALLAALALPMQANAAGTRAGSTISNTASASFDTGGGPTTI CEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE DSNRVDLLVDELLDVTVDSGNPADVPTTPGATGQVLTFSVTNNGNGVEDFALSTVANAGG CCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCC DDYDPAVTQVYLDNGDGLFDAGTDTLYIAGVNDPTLDPDESTTVFVVTTTPGAVVDGNRG CCCCCCEEEEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEECCCC IVSLAAAAKTGTGAPGDSFAGQGEGGGDAVVGSTGADGEDAGAFVVSAATVTLVKSASIT EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEEEECCCCC NPLGTADPIPGATITYTIVATVAGSGSVNGLAITDNIPADTSYIPGSITLGGSGLTDAAD CCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCC ADAGDFNGTRINVALGTVAGGQTRTVTFQTLID CCCCCCCCCEEEEEEEEECCCCEEEEEEEEECC >Mature Secondary Structure MMIAPVGGAKHRLLPSCSFIALLAALALPMQANAAGTRAGSTISNTASASFDTGGGPTTI CEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE DSNRVDLLVDELLDVTVDSGNPADVPTTPGATGQVLTFSVTNNGNGVEDFALSTVANAGG CCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCC DDYDPAVTQVYLDNGDGLFDAGTDTLYIAGVNDPTLDPDESTTVFVVTTTPGAVVDGNRG CCCCCCEEEEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEECCCC IVSLAAAAKTGTGAPGDSFAGQGEGGGDAVVGSTGADGEDAGAFVVSAATVTLVKSASIT EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEEEECCCCC NPLGTADPIPGATITYTIVATVAGSGSVNGLAITDNIPADTSYIPGSITLGGSGLTDAAD CCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCC ADAGDFNGTRINVALGTVAGGQTRTVTFQTLID CCCCCCCCCEEEEEEEEECCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA