Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486736

Identifier: 103486736

GI number: 103486736

Start: 1300431

End: 1302407

Strand: Reverse

Name: 103486736

Synonym: Sala_1249

Alternate gene names: NA

Gene position: 1302407-1300431 (Counterclockwise)

Preceding gene: 103486737

Following gene: 103486734

Centisome position: 38.93

GC content: 54.32

Gene sequence:

>1977_bases
ATGAAAATCCCGGGTCAGTTCTCAGCGCAAATCAACATTGAGGTGGCCGACCGTGCCTATTACCAGATTGGTGAGGGCGC
ACAGAAGCTCAGGATCGATGGGTATGCAGGTGACCCACGCGACGCAGAGGGTGTTCTCGGACTGATCGTCTGTGATTTCG
TTGACGGCGACGAAGTTCAGACCTTCGGGAAATCCGACGTTTCGCCTATCCTCAATCCTCTGATCCGCTTCCTTAAAAAA
GCCCGGACCGAAGAGTTCAGGGATTCGTTGAATGAAGTCAGCCCCGCATTTCAGGTCTCGGATTTGATCATCACCACGTG
GTCGCGGGTCACTAAGGTCAAGCTGATCCTTGTTTCGAACCGCCAGTATATCGGCCGGGATGACGCGGTGAAACTTGCAG
AACTTGGCGATGTACCAGTCACCTGGTCTGTATGGGATCTCGCACGATTCGAACGTTTCGACCGATCCGGTCAGGCGCGA
GAGGATATGGTGATCGATTTCGCCAATGATTTCGGCGCTCCCCTACCTGCGCTCAAGGCTTCCCAGACCGACGCAGCTCT
CGAGAGCTATCTAATGATCGTGCCAGGTCAGCAGTTGGCAGCGATCTATGATCGATGGGGCGCGCGCCTGCTGGAGGCGA
ATGTGCGGTCTTTTCTTCAGGCGCGGGCGAAGACGAACAAGGGCATCCAGAAGACCGTTAAGGAGGAGCCTGAGCTCTTC
TTTCCATACAACAATGGACTATCCGCCACGGCAGACGAAGTCACCTGTGTTCGTTCGGAAGAAGGTCTTGCGATTGCTTC
CATTAACAATTTGCAGATCGTAAACGGAGCGCAGACGACAGGATCGATTCACAGCGCACTTAAAACGGCGAAGGAGCAGC
TTTCGCATGTATTCGTGCAAATGAAGCTGACAGTGGTGCCTCCTGATCGGTCAGAGGAAATTGTGCCAAAGATATCGGAG
TACGCCAATACTCAGAACAAGGTGAATGCGGCCGACTTTTTTTCCAATCACCCCTTCCACATCCGTATCGAGCAGTTTTC
TCGGAGCGTCATCTTCACTGCGCGTGAAGGTGAGCGTCACGACAGCAAGTGGTTCTATGAGCGTTCTCGCGGTCAGTTCA
TCAACGCGCGGAGCCGACTTACGGTCGCACAGCAGAAGAAGTTTGATCTAGAGTTCCCCAAGGCGCAGCTCTTTAGCAAG
ACTGACCTAGCGAAGTTCGAATACTCGGCCTCCGGGCATCCTCACATTGTTTCGCGGGGGGCGCAGAAGAACTTTGCCGA
TTTCGCGAGAGAGATCGGTGAGGCCTGGCCAAAGAGCGACAGCAAGTATGATGAACTTTGGTATCGGCGCCTGATTGCAA
AGGCCATCATCTTCCGCAGGTTGGAAAGCGAAGTGCCAAAGCAAGATTGGTACGAAGGCGGCTATCGCGCCAATATCGTC
ACCTACGCCATGGCAAAAGTGTTTCACGATGCCAATGGCCAGAAACAGATGCTCGATCTCGACACCATCTGGCGGCGGCA
GGCGGTTTCCGATGCCCTTCTGCGCGCCCTGCTTCTCGCCGCGGCGGAGGCTCATGATGCGATTACGCATCCTCCGACTG
GCGTTCGCAACATGTCGGAATGGGCAAAGCAACAGGCCTGTTGGAACGGCCTTAAGAGCCGAACACTGAAGTATGGGGAA
GATTTCGGAAGTTGCTTGGCCCTCGTAGATACCGTTCGCACCGAGGAACGCGAAGCTCGCGCTAACACGGTGTTGACAGA
GGGCATAAACGCTCAGGCCGAAGTCGTGAAACTTAAGGCTCCATTCTGGAATAATGTAATGGAATGGGGGCGGGCGAAAA
AGAAACTGACTCCTAAGGATATGCAAGTTCTAGAGATTTGCAGTTCGATGCCGCGACGGATACCCACCGATTTCCAGGCA
AAGCACGCGCTCGAGGTGCTTGCGCGCATTCGTGAACACGGGTTCGATAGCGGCTGA

Upstream 100 bases:

>100_bases
CCAGTTCCACCGCGCCCAAATCCAGAAAGGGGTAATGCCAACACTTGACGATGCCCGCTAAGGGCAACACTTAACCCATA
CCCACCCGGGTCAGTTCTCG

Downstream 100 bases:

>100_bases
TGTTTATGGCGCTAGCCTTGTGCCTAGATCTATCTGATCCCGTGCTTTCGGTCACCGCCGCTCTCCATGAGGCCAAGCAC
CTCCGCATCACGTCTTGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 658; Mature: 658

Protein sequence:

>658_residues
MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQTFGKSDVSPILNPLIRFLKK
ARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSNRQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAR
EDMVIDFANDFGAPLPALKASQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF
FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQMKLTVVPPDRSEEIVPKISE
YANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERHDSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSK
TDLAKFEYSASGHPHIVSRGAQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV
TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSEWAKQQACWNGLKSRTLKYGE
DFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKAPFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQA
KHALEVLARIREHGFDSG

Sequences:

>Translated_658_residues
MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQTFGKSDVSPILNPLIRFLKK
ARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSNRQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAR
EDMVIDFANDFGAPLPALKASQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF
FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQMKLTVVPPDRSEEIVPKISE
YANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERHDSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSK
TDLAKFEYSASGHPHIVSRGAQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV
TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSEWAKQQACWNGLKSRTLKYGE
DFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKAPFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQA
KHALEVLARIREHGFDSG
>Mature_658_residues
MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQTFGKSDVSPILNPLIRFLKK
ARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSNRQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAR
EDMVIDFANDFGAPLPALKASQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF
FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQMKLTVVPPDRSEEIVPKISE
YANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERHDSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSK
TDLAKFEYSASGHPHIVSRGAQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV
TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSEWAKQQACWNGLKSRTLKYGE
DFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKAPFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQA
KHALEVLARIREHGFDSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 74321; Mature: 74321

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQ
CCCCCCCCEEEEEEECCHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCHHH
TFGKSDVSPILNPLIRFLKKARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSN
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEEEEC
RQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAREDMVIDFANDFGAPLPALKA
CCCCCCCCCCHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCHHHEEEEHHHCCCCCCCCCC
SQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF
CCHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEE
FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQ
EECCCCCCCCCCCEEEEECCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHEEEE
MKLTVVPPDRSEEIVPKISEYANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERH
EEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEHHHCCCEEEEEECCCCCC
DSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSKTDLAKFEYSASGHPHIVSRG
CCHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHEEECCCCCCHHHCCC
AQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHH
TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSE
HHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
WAKQQACWNGLKSRTLKYGEDFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
PFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQAKHALEVLARIREHGFDSG
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKIPGQFSAQINIEVADRAYYQIGEGAQKLRIDGYAGDPRDAEGVLGLIVCDFVDGDEVQ
CCCCCCCCEEEEEEECCHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCCHHH
TFGKSDVSPILNPLIRFLKKARTEEFRDSLNEVSPAFQVSDLIITTWSRVTKVKLILVSN
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEEEEEC
RQYIGRDDAVKLAELGDVPVTWSVWDLARFERFDRSGQAREDMVIDFANDFGAPLPALKA
CCCCCCCCCCHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCHHHEEEEHHHCCCCCCCCCC
SQTDAALESYLMIVPGQQLAAIYDRWGARLLEANVRSFLQARAKTNKGIQKTVKEEPELF
CCHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEE
FPYNNGLSATADEVTCVRSEEGLAIASINNLQIVNGAQTTGSIHSALKTAKEQLSHVFVQ
EECCCCCCCCCCCEEEEECCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHEEEE
MKLTVVPPDRSEEIVPKISEYANTQNKVNAADFFSNHPFHIRIEQFSRSVIFTAREGERH
EEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEHHHCCCEEEEEECCCCCC
DSKWFYERSRGQFINARSRLTVAQQKKFDLEFPKAQLFSKTDLAKFEYSASGHPHIVSRG
CCHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHEEECCCCCCHHHCCC
AQKNFADFAREIGEAWPKSDSKYDELWYRRLIAKAIIFRRLESEVPKQDWYEGGYRANIV
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHH
TYAMAKVFHDANGQKQMLDLDTIWRRQAVSDALLRALLLAAAEAHDAITHPPTGVRNMSE
HHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
WAKQQACWNGLKSRTLKYGEDFGSCLALVDTVRTEEREARANTVLTEGINAQAEVVKLKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
PFWNNVMEWGRAKKKLTPKDMQVLEICSSMPRRIPTDFQAKHALEVLARIREHGFDSG
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA