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The map label for this gene is yfdE [H]

Identifier: 103486729

GI number: 103486729

Start: 1292041

End: 1293171

Strand: Reverse

Name: yfdE [H]

Synonym: Sala_1242

Alternate gene names: 103486729

Gene position: 1293171-1292041 (Counterclockwise)

Preceding gene: 103486731

Following gene: 103486726

Centisome position: 38.66

GC content: 66.76

Gene sequence:

>1131_bases
ATGACGGGTCCGCTGCACGGCATCAAGATCATCGAGTTCGCCGGGATCGGCCCCGGCCCCTTCTGCGCGATGATGCTCGC
CGACCATGGCGCCGAGGTGATCCGTATCGACCGGCCCGACGGCTTCCTCGACCCGCGCGATCCCCTGTCGCGCAATCGCA
CGTCGATCGCACTCGACATGAAAAAGCCCGACGCGGTGCAGATCGCGCGTGACCTGTGCCGCGGCGCCGATGCGATCATC
GAAGGTTATCGCCCCGGCGTGATGGAGCGCCTTGGCCTTGGCCCCGACGTCCTGCTCGCCGACAATCCAAGGCTCGTTTA
CGGCCGCATGACCGGCTGGGGGCAGTATGGCCCCTATTCGCAGGCGGCGGGCCACGACATCAATTATATCGCGCTGTCGG
GCGTCCTCCACGGCATCGGGCGCGCCGGTGAAAAGCCCGTGCCGCCGGTCAATTATGTCGGCGATTTCGGCGGCGGCGGC
ATGATGCTGGCGTTCGGCATGACGAGCGCGCTGCTCCACGCCGCGCGGACCGGCGAGGGCCAGGTGATCGATTGCGCGAT
GACCGACGGGTCGGCGCTGCTCGCGGGCATGACGTGGGGCTTCAAGGCGATGGGGCGGCTCAAGGACGAAGCCGGGGTCA
ATATGCTCGACGGCGGCGCGCATTTCTATGACACTTACCGCTGCGCCGACGGCAAGTTCATCTCGATAGGGTCGATCGAG
CCTCAATTCTATGCCCTGCTGCGCCAAAAGACCGGCCTCGACGCCGACCCCGATTTCGACGCCCAGCACGATCCGTCGAA
ATGGGGGCCGCTCAAGGACAAGCTGACGGCGCTGTTCGCGACCAAAACGCGCGATGAATGGTGCGCGATCATGGAAATGA
CCGACATCTGCTTTGCACCCGTCCTCTCGCTCGAAGAGGCGCCGCAGCACCCGCACAATGTGGCGCGCGAGACGTTCATC
GACATAGGCGGCGCAATCCAGCCCGCCCCGGCGCCGCGTTATTCGGTCACCTCCAACGACACGCCGCGCGCCGCGCCGAC
CGTCGGCGCGGATGGCGATGCAGTGCTGGCGGCGCTGGGCTATGACGCCGGCAGGATCGCGGCGCTGCGCGAAGGCGGCG
CGGTGCATTAG

Upstream 100 bases:

>100_bases
GAGCATGGCAGCGTCCCTTTGGTTTTGGTTTGGCGTGCCCTAGGGCGCGAATATGACAGAGGCGGGGCACCCGCATGGAT
TGTAACAAGAGGAGATGGAT

Downstream 100 bases:

>100_bases
AGCGAAGCGAAGCAATCCAGGGCGGGCTATGCTACTCTGGATTGCTTCGCTGCGTTCGCAATATCGATGTTTGAGCGGTT
CGATCAGCGTTCGGTCAGCA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MTGPLHGIKIIEFAGIGPGPFCAMMLADHGAEVIRIDRPDGFLDPRDPLSRNRTSIALDMKKPDAVQIARDLCRGADAII
EGYRPGVMERLGLGPDVLLADNPRLVYGRMTGWGQYGPYSQAAGHDINYIALSGVLHGIGRAGEKPVPPVNYVGDFGGGG
MMLAFGMTSALLHAARTGEGQVIDCAMTDGSALLAGMTWGFKAMGRLKDEAGVNMLDGGAHFYDTYRCADGKFISIGSIE
PQFYALLRQKTGLDADPDFDAQHDPSKWGPLKDKLTALFATKTRDEWCAIMEMTDICFAPVLSLEEAPQHPHNVARETFI
DIGGAIQPAPAPRYSVTSNDTPRAAPTVGADGDAVLAALGYDAGRIAALREGGAVH

Sequences:

>Translated_376_residues
MTGPLHGIKIIEFAGIGPGPFCAMMLADHGAEVIRIDRPDGFLDPRDPLSRNRTSIALDMKKPDAVQIARDLCRGADAII
EGYRPGVMERLGLGPDVLLADNPRLVYGRMTGWGQYGPYSQAAGHDINYIALSGVLHGIGRAGEKPVPPVNYVGDFGGGG
MMLAFGMTSALLHAARTGEGQVIDCAMTDGSALLAGMTWGFKAMGRLKDEAGVNMLDGGAHFYDTYRCADGKFISIGSIE
PQFYALLRQKTGLDADPDFDAQHDPSKWGPLKDKLTALFATKTRDEWCAIMEMTDICFAPVLSLEEAPQHPHNVARETFI
DIGGAIQPAPAPRYSVTSNDTPRAAPTVGADGDAVLAALGYDAGRIAALREGGAVH
>Mature_375_residues
TGPLHGIKIIEFAGIGPGPFCAMMLADHGAEVIRIDRPDGFLDPRDPLSRNRTSIALDMKKPDAVQIARDLCRGADAIIE
GYRPGVMERLGLGPDVLLADNPRLVYGRMTGWGQYGPYSQAAGHDINYIALSGVLHGIGRAGEKPVPPVNYVGDFGGGGM
MLAFGMTSALLHAARTGEGQVIDCAMTDGSALLAGMTWGFKAMGRLKDEAGVNMLDGGAHFYDTYRCADGKFISIGSIEP
QFYALLRQKTGLDADPDFDAQHDPSKWGPLKDKLTALFATKTRDEWCAIMEMTDICFAPVLSLEEAPQHPHNVARETFID
IGGAIQPAPAPRYSVTSNDTPRAAPTVGADGDAVLAALGYDAGRIAALREGGAVH

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=367, Percent_Identity=44.9591280653951, Blast_Score=332, Evalue=3e-91,
Organism=Homo sapiens, GI266456254, Length=367, Percent_Identity=44.9591280653951, Blast_Score=332, Evalue=5e-91,
Organism=Homo sapiens, GI266458393, Length=248, Percent_Identity=50.8064516129032, Blast_Score=270, Evalue=2e-72,
Organism=Homo sapiens, GI266458397, Length=243, Percent_Identity=51.440329218107, Blast_Score=268, Evalue=4e-72,
Organism=Homo sapiens, GI266458395, Length=130, Percent_Identity=50.7692307692308, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI42822893, Length=130, Percent_Identity=50.7692307692308, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI300863128, Length=397, Percent_Identity=27.9596977329975, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=26.0047281323877, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI300863126, Length=151, Percent_Identity=37.0860927152318, Blast_Score=103, Evalue=2e-22,
Organism=Escherichia coli, GI87082093, Length=344, Percent_Identity=28.1976744186047, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788717, Length=428, Percent_Identity=25.7009345794392, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786222, Length=397, Percent_Identity=29.7229219143577, Blast_Score=102, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=38.5294117647059, Blast_Score=236, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI32564160, Length=331, Percent_Identity=36.8580060422961, Blast_Score=229, Evalue=1e-60,
Organism=Drosophila melanogaster, GI24585488, Length=343, Percent_Identity=42.8571428571429, Blast_Score=292, Evalue=2e-79,
Organism=Drosophila melanogaster, GI24648431, Length=424, Percent_Identity=28.3018867924528, Blast_Score=132, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40010; Mature: 39879

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPLHGIKIIEFAGIGPGPFCAMMLADHGAEVIRIDRPDGFLDPRDPLSRNRTSIALDM
CCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEC
KKPDAVQIARDLCRGADAIIEGYRPGVMERLGLGPDVLLADNPRLVYGRMTGWGQYGPYS
CCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCC
QAAGHDINYIALSGVLHGIGRAGEKPVPPVNYVGDFGGGGMMLAFGMTSALLHAARTGEG
CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCC
QVIDCAMTDGSALLAGMTWGFKAMGRLKDEAGVNMLDGGAHFYDTYRCADGKFISIGSIE
CEEEEEECCCCEEEEHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEEECCCCEEEECCCC
PQFYALLRQKTGLDADPDFDAQHDPSKWGPLKDKLTALFATKTRDEWCAIMEMTDICFAP
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VLSLEEAPQHPHNVARETFIDIGGAIQPAPAPRYSVTSNDTPRAAPTVGADGDAVLAALG
HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEC
YDAGRIAALREGGAVH
CCCHHEEEECCCCCCC
>Mature Secondary Structure 
TGPLHGIKIIEFAGIGPGPFCAMMLADHGAEVIRIDRPDGFLDPRDPLSRNRTSIALDM
CCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEC
KKPDAVQIARDLCRGADAIIEGYRPGVMERLGLGPDVLLADNPRLVYGRMTGWGQYGPYS
CCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCC
QAAGHDINYIALSGVLHGIGRAGEKPVPPVNYVGDFGGGGMMLAFGMTSALLHAARTGEG
CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCC
QVIDCAMTDGSALLAGMTWGFKAMGRLKDEAGVNMLDGGAHFYDTYRCADGKFISIGSIE
CEEEEEECCCCEEEEHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEEECCCCEEEECCCC
PQFYALLRQKTGLDADPDFDAQHDPSKWGPLKDKLTALFATKTRDEWCAIMEMTDICFAP
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VLSLEEAPQHPHNVARETFIDIGGAIQPAPAPRYSVTSNDTPRAAPTVGADGDAVLAALG
HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEC
YDAGRIAALREGGAVH
CCCHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]