| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486681
Identifier: 103486681
GI number: 103486681
Start: 1234050
End: 1234484
Strand: Reverse
Name: 103486681
Synonym: Sala_1193
Alternate gene names: NA
Gene position: 1234484-1234050 (Counterclockwise)
Preceding gene: 103486682
Following gene: 103486672
Centisome position: 36.9
GC content: 59.54
Gene sequence:
>435_bases ATGAATACGAACGCAATTCTTGGACCGGTCGCGACGCTCGCGCTGTGGTCGATGGTCATGTGGGTATGGATGTATGCGAC ACGCATCCCCGCGATGCAGCGCGCCAAGATCGACGCCGCCAAGATGGTCGGCGGCACCGGCAAGGGGCTCGACGATGTCC TGCCCGCCGAAGTGCAGTGGAAGGCACATAATTACAATCATTTGATGGAACAGCCGACCGTGTTCTATGCTGTCGCGATC GCCCTGGCGATCGGCGGCATGGGCGGCGGGCTGAACGCGCAGATCGCCTGGGCCTATGTCGCGCTGCGCATCGTCCATAG CCTCATTCAAGTGACGGTAAACCGCGTGATGTGGCGCTTTCTGGTGTTCGCGTTGGCCAGTCTTGCCTTATTTGCGCTCA GTGTTCACGCCTTCATGGGGTTTGTGCTGCATTGA
Upstream 100 bases:
>100_bases CGTATTCCGGTGCGTTTCACCATCTTTGCGCTCGCGACACTCTGTCTGTTCGCGCTATCGATTCTCGCCGTCATCGCCAC TCTGGGTTGAAGGAACTATC
Downstream 100 bases:
>100_bases TCAGCGGGCGAAGCGCGCGGCCAGTTCCACATGGGTCGACCATCGGAACTGGCCGACGGGCTGCACCCAGTCGAGCGTAT AGCCGCCCTCGACGAGTATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MNTNAILGPVATLALWSMVMWVWMYATRIPAMQRAKIDAAKMVGGTGKGLDDVLPAEVQWKAHNYNHLMEQPTVFYAVAI ALAIGGMGGGLNAQIAWAYVALRIVHSLIQVTVNRVMWRFLVFALASLALFALSVHAFMGFVLH
Sequences:
>Translated_144_residues MNTNAILGPVATLALWSMVMWVWMYATRIPAMQRAKIDAAKMVGGTGKGLDDVLPAEVQWKAHNYNHLMEQPTVFYAVAI ALAIGGMGGGLNAQIAWAYVALRIVHSLIQVTVNRVMWRFLVFALASLALFALSVHAFMGFVLH >Mature_144_residues MNTNAILGPVATLALWSMVMWVWMYATRIPAMQRAKIDAAKMVGGTGKGLDDVLPAEVQWKAHNYNHLMEQPTVFYAVAI ALAIGGMGGGLNAQIAWAYVALRIVHSLIQVTVNRVMWRFLVFALASLALFALSVHAFMGFVLH
Specific function: Unknown
COG id: COG5331
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15799; Mature: 15799
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.9 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.9 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTNAILGPVATLALWSMVMWVWMYATRIPAMQRAKIDAAKMVGGTGKGLDDVLPAEVQW CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHCCCCHHEE KAHNYNHLMEQPTVFYAVAIALAIGGMGGGLNAQIAWAYVALRIVHSLIQVTVNRVMWRF CCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVFALASLALFALSVHAFMGFVLH HHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNTNAILGPVATLALWSMVMWVWMYATRIPAMQRAKIDAAKMVGGTGKGLDDVLPAEVQW CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHCCCCHHEE KAHNYNHLMEQPTVFYAVAIALAIGGMGGGLNAQIAWAYVALRIVHSLIQVTVNRVMWRF CCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVFALASLALFALSVHAFMGFVLH HHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA