| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486627
Identifier: 103486627
GI number: 103486627
Start: 1177176
End: 1177904
Strand: Direct
Name: 103486627
Synonym: Sala_1139
Alternate gene names: NA
Gene position: 1177176-1177904 (Clockwise)
Preceding gene: 103486626
Following gene: 103486628
Centisome position: 35.19
GC content: 67.08
Gene sequence:
>729_bases ATGGCCGGGGGAAATATGACGGGTCAGGATGGCGAAGGGCTGGGGCTCGAAGGCGAGGACCGGCTGCCCTGGCTCGAAGC CGCCGACGGCTTCGACGACGATGGCGAAGTGTCGCCCGCCCGCCTGCTGATCATGGTGCTCGGCGGCCTGTTGCTGATCG GCGCCGTGCTTGGCGGACTCTGGTGGATCCAGAATGGTGGCGCGCGCGGCAAGGGCGAACTGATCGCCGCTGAAAAGGGC GACTACAAGGTCGCGCCCGCGAGCGACGGCGCCAAGACCTTCGAGGGTGAAGGCGACGCCAGCTTCTCGGCCAGCGAGGG TGCCGCACCGGCGGGCAAGGTCGATCCGTCGCGCATGCCCGAGGAACCGGCCGTGACAGCGGTGGAGCACGAAGCCGCCG CGAAGCAGGCGAAGAAGGTGCCCGCTCCGGCGGCGAAGGCGGAACCCAGGGCGGCCGCAAAGGCCGCGGCAGCGTCTGAA GCGGCGGCACCGGGCGATGCGATGATCCAGCTTGGCGCGTTCAGCAGCGAAGGCGCCGCAGCGAAGGCCTGGACGAATCT GTCCAAGCGTTTTGCCTATCTCGCCGATCTCAATCGGGTAATTTCGCCGGCCACGGTCGGATCGGGAACCGTTTATCGTT TGCGCGTTTCGGCAGGAACGGCCGCCAACGCCGCGAATTTGTGCGGAAAACTGCGCGTAGCGGGTGAAAATTGCGTCATC GTCCGCTGA
Upstream 100 bases:
>100_bases AATTGACTGCGACGCGCCTTTATCTGGCCGACGGAATCGGGCAGATCATTCGCAACGGGCTGCAGCTCATGGGGGTTGAG GCACTCGAGGAGATGGTTTG
Downstream 100 bases:
>100_bases TTCGGGCCGCTTGGCCGCAGACTCGGTTGGTGCAATCGTGCGGCTGTGGCATGATCGTCGCGGTGTCCGTCGAGTGAGGG GGCGACGGGCGATGGAGGTT
Product: sporulation related
Products: NA
Alternate protein names: Sporulation Domain-Containing Protein
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MAGGNMTGQDGEGLGLEGEDRLPWLEAADGFDDDGEVSPARLLIMVLGGLLLIGAVLGGLWWIQNGGARGKGELIAAEKG DYKVAPASDGAKTFEGEGDASFSASEGAAPAGKVDPSRMPEEPAVTAVEHEAAAKQAKKVPAPAAKAEPRAAAKAAAASE AAAPGDAMIQLGAFSSEGAAAKAWTNLSKRFAYLADLNRVISPATVGSGTVYRLRVSAGTAANAANLCGKLRVAGENCVI VR
Sequences:
>Translated_242_residues MAGGNMTGQDGEGLGLEGEDRLPWLEAADGFDDDGEVSPARLLIMVLGGLLLIGAVLGGLWWIQNGGARGKGELIAAEKG DYKVAPASDGAKTFEGEGDASFSASEGAAPAGKVDPSRMPEEPAVTAVEHEAAAKQAKKVPAPAAKAEPRAAAKAAAASE AAAPGDAMIQLGAFSSEGAAAKAWTNLSKRFAYLADLNRVISPATVGSGTVYRLRVSAGTAANAANLCGKLRVAGENCVI VR >Mature_241_residues AGGNMTGQDGEGLGLEGEDRLPWLEAADGFDDDGEVSPARLLIMVLGGLLLIGAVLGGLWWIQNGGARGKGELIAAEKGD YKVAPASDGAKTFEGEGDASFSASEGAAPAGKVDPSRMPEEPAVTAVEHEAAAKQAKKVPAPAAKAEPRAAAKAAAASEA AAPGDAMIQLGAFSSEGAAAKAWTNLSKRFAYLADLNRVISPATVGSGTVYRLRVSAGTAANAANLCGKLRVAGENCVIV R
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24387; Mature: 24255
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGGNMTGQDGEGLGLEGEDRLPWLEAADGFDDDGEVSPARLLIMVLGGLLLIGAVLGGL CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH WWIQNGGARGKGELIAAEKGDYKVAPASDGAKTFEGEGDASFSASEGAAPAGKVDPSRMP EEEECCCCCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC EEPAVTAVEHEAAAKQAKKVPAPAAKAEPRAAAKAAAASEAAAPGDAMIQLGAFSSEGAA CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH AKAWTNLSKRFAYLADLNRVISPATVGSGTVYRLRVSAGTAANAANLCGKLRVAGENCVI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHEEEECCCCEEE VR EC >Mature Secondary Structure AGGNMTGQDGEGLGLEGEDRLPWLEAADGFDDDGEVSPARLLIMVLGGLLLIGAVLGGL CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH WWIQNGGARGKGELIAAEKGDYKVAPASDGAKTFEGEGDASFSASEGAAPAGKVDPSRMP EEEECCCCCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC EEPAVTAVEHEAAAKQAKKVPAPAAKAEPRAAAKAAAASEAAAPGDAMIQLGAFSSEGAA CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH AKAWTNLSKRFAYLADLNRVISPATVGSGTVYRLRVSAGTAANAANLCGKLRVAGENCVI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHEEEECCCCEEE VR EC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA