| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486616
Identifier: 103486616
GI number: 103486616
Start: 1166876
End: 1167517
Strand: Reverse
Name: 103486616
Synonym: Sala_1128
Alternate gene names: NA
Gene position: 1167517-1166876 (Counterclockwise)
Preceding gene: 103486617
Following gene: 103486615
Centisome position: 34.9
GC content: 63.71
Gene sequence:
>642_bases ATGAAAAATATCGCAACTTGGACGGTCCTGGCGCTGGCGACGACCCTCGCCGGATGCGCGGGCAGCGCCTACAGCAATCG CAGCCTGGAATCGGTCCATCAACCGGTCGTGCGCAACAGCATCTATCAGTTCGATGTCGCCGCGAAGGATGGCGAACTGC CGCCCAGCGAACAGGGTCGTCTGCAAGGCTGGTTCGATGCGATGGGCATCCGCTATGGCGACCGCGTCGCAATCGAGGAC CCCTCGCTTTATGGCGCATCCTCGGCGCAGGCGACCGTCCGGGCGATGGTCGAACGCCGCGGACTTCTGCTCAGCAAGGA TGTGCCGGTGACCACCGGTGCTGTTCCCGACGGTCATATCCGCGTCGTGGTTACGCGCGCATCGGCGTCGGTGCCGGGTT GCCCCGACTGGAACAGCAAGTCGTCGCTGAACTCGCTCAACGCGACTTCGTCCAATTATGGCTGCGCGACCAACAGCAAT CTTGCAGCAATGGTCGCCGACCCCAACGACCTCATCAAAGGCACGCGCGACACAGGCCATGACCCGGTCGCGGCAACGCG CGCCATCCAGACCTATCGCACGAAACCTCAGACCGGGGCCGGCGAACTGACCAAAACACCCACGAGCGGAGGCGGCCAGT GA
Upstream 100 bases:
>100_bases GACTCCAATGTGGGTGATGCCGACCGCCCGCGCGGCGGCGGCAGCGACGCCTCGCCCGGTTTCAGCATCAAGTGACACGG CCGATTTCAGGAGCAAAGTG
Downstream 100 bases:
>100_bases ACGCTCATTTCAAATCTGCAACGCTGCGCGATCCTTTCAACGCGTTCGTCTGTGACGATGATACGCTGGAACTGATCCGC GTCGCGGCCAGCGACATGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MKNIATWTVLALATTLAGCAGSAYSNRSLESVHQPVVRNSIYQFDVAAKDGELPPSEQGRLQGWFDAMGIRYGDRVAIED PSLYGASSAQATVRAMVERRGLLLSKDVPVTTGAVPDGHIRVVVTRASASVPGCPDWNSKSSLNSLNATSSNYGCATNSN LAAMVADPNDLIKGTRDTGHDPVAATRAIQTYRTKPQTGAGELTKTPTSGGGQ
Sequences:
>Translated_213_residues MKNIATWTVLALATTLAGCAGSAYSNRSLESVHQPVVRNSIYQFDVAAKDGELPPSEQGRLQGWFDAMGIRYGDRVAIED PSLYGASSAQATVRAMVERRGLLLSKDVPVTTGAVPDGHIRVVVTRASASVPGCPDWNSKSSLNSLNATSSNYGCATNSN LAAMVADPNDLIKGTRDTGHDPVAATRAIQTYRTKPQTGAGELTKTPTSGGGQ >Mature_213_residues MKNIATWTVLALATTLAGCAGSAYSNRSLESVHQPVVRNSIYQFDVAAKDGELPPSEQGRLQGWFDAMGIRYGDRVAIED PSLYGASSAQATVRAMVERRGLLLSKDVPVTTGAVPDGHIRVVVTRASASVPGCPDWNSKSSLNSLNATSSNYGCATNSN LAAMVADPNDLIKGTRDTGHDPVAATRAIQTYRTKPQTGAGELTKTPTSGGGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22337; Mature: 22337
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIATWTVLALATTLAGCAGSAYSNRSLESVHQPVVRNSIYQFDVAAKDGELPPSEQGR CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC LQGWFDAMGIRYGDRVAIEDPSLYGASSAQATVRAMVERRGLLLSKDVPVTTGAVPDGHI CHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCEECCCCCCCE RVVVTRASASVPGCPDWNSKSSLNSLNATSSNYGCATNSNLAAMVADPNDLIKGTRDTGH EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCC DPVAATRAIQTYRTKPQTGAGELTKTPTSGGGQ CCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCC >Mature Secondary Structure MKNIATWTVLALATTLAGCAGSAYSNRSLESVHQPVVRNSIYQFDVAAKDGELPPSEQGR CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC LQGWFDAMGIRYGDRVAIEDPSLYGASSAQATVRAMVERRGLLLSKDVPVTTGAVPDGHI CHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCEECCCCCCCE RVVVTRASASVPGCPDWNSKSSLNSLNATSSNYGCATNSNLAAMVADPNDLIKGTRDTGH EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCC DPVAATRAIQTYRTKPQTGAGELTKTPTSGGGQ CCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA