| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486533
Identifier: 103486533
GI number: 103486533
Start: 1076498
End: 1077640
Strand: Reverse
Name: 103486533
Synonym: Sala_1044
Alternate gene names: NA
Gene position: 1077640-1076498 (Counterclockwise)
Preceding gene: 103486534
Following gene: 103486532
Centisome position: 32.21
GC content: 69.29
Gene sequence:
>1143_bases ATGGGCGCTGCAAGCGATCAGCCGGCGCGGCGGCGGCACGACTGGACGGGCTGGCTGTTCGTCCTGCTCGCGATGCTTGC GATCGGCGGTGTCCTCCAAGCGAGCGGCGACAGCGTCCCGCGCTCCCTGCGTCCTCAGCCGGTCGCGCCGCCCGCCGATG TCGTCCCTGAAGCGCCGCCAATGGTGCTCGCACCGCTTACCGCGGCGGACGCGCGCGCCCAGAACGCCGAAATCGACATC ATTACCAGGGGCTTCGCGGCCCCGCCCCCCTTCGTCTACGCCGGGAACGGCGATGCCCGTGCCCGCGCGCGCGACTGCCT CGCCGCCGCGATGCTTTACGAGGCGGGAGACAATGCGCGCGGACAGCAGGCGGTGGGCCAGGTTGTGCTTAACCGTGCGC GCCACCCCGCCTTCCCGAAATCGATCTGCGGCGTGGTGTTCCAGGGTTCCGAACGCGCAACCGGCTGCCAGTTCACCTTC ACCTGCGACGGCGCACTCGCGCGCCGCTATTCGGACGCCGCGTGGCAGCGCGCGCGGAGCAATGCAGACCTGATGCTGTC GGGCGGCACCTATCCAGCGGTCGGGCTCGCGACCCATTATCACACCGACTGGGTGCGCCCCTATTGGAGCGACAGCCTGG AAAAGATCGCGATTGTCGATACGCACCTCTTTTTCCGCTGGCCGGGCTATTGGGGCACGCCGGGCGCCTTTCGCGGCGCG GTGTCAGGCGGCGACGGGCCGGTCGCCAAACTCGCCGCCATTTCGCCGCTCCACGCGCTCGCGCTCGGCCTGCGTGCCGA CATGGCGGCCGTCGATGCCAACGCCGCGGTCGGCGCGGCGCGCATCGTGCCGGGCATGGGTGCGGCGGCGGGCCGCGACA CCATCTATATCCAGCTCGACCGCCGCGCCGCGCCCGAAAGCTTCGTCGCCACCGCGCTGCGCCTCTGTGGCGACCAGCCC TATTGCAAATTCATGGGCTGGACCAATCCGGTGCTGAAGCCCGACAGCGATGCGATGACCGACACGCAGCGCGCGGCGAT GAGCTTCTCCTACCTCCGCGACGACAAGGCGGGATTCGAAAAGGCGCTGTGGAATTGCAGCGAATATAAGCGCGACGACG CGCGCCAGTGCATGAAGCGCTGA
Upstream 100 bases:
>100_bases CGAACTGCCGCCGGGCAGCCGCGTACTCGGTTTCAACTACGACACCGGCGAGCGTTATCTGTCGGTGCCCGACTTCCTGC CCGAAATCTGACCTTCCGCC
Downstream 100 bases:
>100_bases GCGCGCACTCGCTTGGGGCTTCCGCCCGCGCGCCGCACGGCCTATAGCGCGCCATGCTTCTCTCCGATCGCGTCCTCTTC CTCGATGGCGAAGCCCTCGT
Product: cell wall hydrolase, SleB
Products: NA
Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MGAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPPMVLAPLTAADARAQNAEIDI ITRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNARGQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTF TCDGALARRYSDAAWQRARSNADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGA VSGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLDRRAAPESFVATALRLCGDQP YCKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFEKALWNCSEYKRDDARQCMKR
Sequences:
>Translated_380_residues MGAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPPMVLAPLTAADARAQNAEIDI ITRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNARGQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTF TCDGALARRYSDAAWQRARSNADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGA VSGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLDRRAAPESFVATALRLCGDQP YCKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFEKALWNCSEYKRDDARQCMKR >Mature_379_residues GAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPPMVLAPLTAADARAQNAEIDII TRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNARGQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTFT CDGALARRYSDAAWQRARSNADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGAV SGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLDRRAAPESFVATALRLCGDQPY CKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFEKALWNCSEYKRDDARQCMKR
Specific function: Unknown
COG id: COG3773
COG function: function code M; Cell wall hydrolyses involved in spore germination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40803; Mature: 40671
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPP CCCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCHHCCCCCCC MVLAPLTAADARAQNAEIDIITRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNAR EEEECCCHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC GQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTFTCDGALARRYSDAAWQRARS HHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHCC NADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGA CCCEEEECCCCCCCEEEECCCCCCCCCHHHCCCCEEEEEEEEEEEECCCCCCCCHHHCCC VSGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHCCCCCCCCCCCEEEEEEC RRAAPESFVATALRLCGDQPYCKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFE CCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH KALWNCSEYKRDDARQCMKR HHHHCHHHHCHHHHHHHHCC >Mature Secondary Structure GAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPP CCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCHHCCCCCCC MVLAPLTAADARAQNAEIDIITRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNAR EEEECCCHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC GQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTFTCDGALARRYSDAAWQRARS HHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHCC NADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGA CCCEEEECCCCCCCEEEECCCCCCCCCHHHCCCCEEEEEEEEEEEECCCCCCCCHHHCCC VSGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHCCCCCCCCCCCEEEEEEC RRAAPESFVATALRLCGDQPYCKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFE CCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH KALWNCSEYKRDDARQCMKR HHHHCHHHHCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA