Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486533

Identifier: 103486533

GI number: 103486533

Start: 1076498

End: 1077640

Strand: Reverse

Name: 103486533

Synonym: Sala_1044

Alternate gene names: NA

Gene position: 1077640-1076498 (Counterclockwise)

Preceding gene: 103486534

Following gene: 103486532

Centisome position: 32.21

GC content: 69.29

Gene sequence:

>1143_bases
ATGGGCGCTGCAAGCGATCAGCCGGCGCGGCGGCGGCACGACTGGACGGGCTGGCTGTTCGTCCTGCTCGCGATGCTTGC
GATCGGCGGTGTCCTCCAAGCGAGCGGCGACAGCGTCCCGCGCTCCCTGCGTCCTCAGCCGGTCGCGCCGCCCGCCGATG
TCGTCCCTGAAGCGCCGCCAATGGTGCTCGCACCGCTTACCGCGGCGGACGCGCGCGCCCAGAACGCCGAAATCGACATC
ATTACCAGGGGCTTCGCGGCCCCGCCCCCCTTCGTCTACGCCGGGAACGGCGATGCCCGTGCCCGCGCGCGCGACTGCCT
CGCCGCCGCGATGCTTTACGAGGCGGGAGACAATGCGCGCGGACAGCAGGCGGTGGGCCAGGTTGTGCTTAACCGTGCGC
GCCACCCCGCCTTCCCGAAATCGATCTGCGGCGTGGTGTTCCAGGGTTCCGAACGCGCAACCGGCTGCCAGTTCACCTTC
ACCTGCGACGGCGCACTCGCGCGCCGCTATTCGGACGCCGCGTGGCAGCGCGCGCGGAGCAATGCAGACCTGATGCTGTC
GGGCGGCACCTATCCAGCGGTCGGGCTCGCGACCCATTATCACACCGACTGGGTGCGCCCCTATTGGAGCGACAGCCTGG
AAAAGATCGCGATTGTCGATACGCACCTCTTTTTCCGCTGGCCGGGCTATTGGGGCACGCCGGGCGCCTTTCGCGGCGCG
GTGTCAGGCGGCGACGGGCCGGTCGCCAAACTCGCCGCCATTTCGCCGCTCCACGCGCTCGCGCTCGGCCTGCGTGCCGA
CATGGCGGCCGTCGATGCCAACGCCGCGGTCGGCGCGGCGCGCATCGTGCCGGGCATGGGTGCGGCGGCGGGCCGCGACA
CCATCTATATCCAGCTCGACCGCCGCGCCGCGCCCGAAAGCTTCGTCGCCACCGCGCTGCGCCTCTGTGGCGACCAGCCC
TATTGCAAATTCATGGGCTGGACCAATCCGGTGCTGAAGCCCGACAGCGATGCGATGACCGACACGCAGCGCGCGGCGAT
GAGCTTCTCCTACCTCCGCGACGACAAGGCGGGATTCGAAAAGGCGCTGTGGAATTGCAGCGAATATAAGCGCGACGACG
CGCGCCAGTGCATGAAGCGCTGA

Upstream 100 bases:

>100_bases
CGAACTGCCGCCGGGCAGCCGCGTACTCGGTTTCAACTACGACACCGGCGAGCGTTATCTGTCGGTGCCCGACTTCCTGC
CCGAAATCTGACCTTCCGCC

Downstream 100 bases:

>100_bases
GCGCGCACTCGCTTGGGGCTTCCGCCCGCGCGCCGCACGGCCTATAGCGCGCCATGCTTCTCTCCGATCGCGTCCTCTTC
CTCGATGGCGAAGCCCTCGT

Product: cell wall hydrolase, SleB

Products: NA

Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MGAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPPMVLAPLTAADARAQNAEIDI
ITRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNARGQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTF
TCDGALARRYSDAAWQRARSNADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGA
VSGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLDRRAAPESFVATALRLCGDQP
YCKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFEKALWNCSEYKRDDARQCMKR

Sequences:

>Translated_380_residues
MGAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPPMVLAPLTAADARAQNAEIDI
ITRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNARGQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTF
TCDGALARRYSDAAWQRARSNADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGA
VSGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLDRRAAPESFVATALRLCGDQP
YCKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFEKALWNCSEYKRDDARQCMKR
>Mature_379_residues
GAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPPMVLAPLTAADARAQNAEIDII
TRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNARGQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTFT
CDGALARRYSDAAWQRARSNADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGAV
SGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLDRRAAPESFVATALRLCGDQPY
CKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFEKALWNCSEYKRDDARQCMKR

Specific function: Unknown

COG id: COG3773

COG function: function code M; Cell wall hydrolyses involved in spore germination

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40803; Mature: 40671

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPP
CCCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCHHCCCCCCC
MVLAPLTAADARAQNAEIDIITRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNAR
EEEECCCHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
GQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTFTCDGALARRYSDAAWQRARS
HHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHCC
NADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGA
CCCEEEECCCCCCCEEEECCCCCCCCCHHHCCCCEEEEEEEEEEEECCCCCCCCHHHCCC
VSGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHCCCCCCCCCCCEEEEEEC
RRAAPESFVATALRLCGDQPYCKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFE
CCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
KALWNCSEYKRDDARQCMKR
HHHHCHHHHCHHHHHHHHCC
>Mature Secondary Structure 
GAASDQPARRRHDWTGWLFVLLAMLAIGGVLQASGDSVPRSLRPQPVAPPADVVPEAPP
CCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCHHCCCCCCC
MVLAPLTAADARAQNAEIDIITRGFAAPPPFVYAGNGDARARARDCLAAAMLYEAGDNAR
EEEECCCHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC
GQQAVGQVVLNRARHPAFPKSICGVVFQGSERATGCQFTFTCDGALARRYSDAAWQRARS
HHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHCC
NADLMLSGGTYPAVGLATHYHTDWVRPYWSDSLEKIAIVDTHLFFRWPGYWGTPGAFRGA
CCCEEEECCCCCCCEEEECCCCCCCCCHHHCCCCEEEEEEEEEEEECCCCCCCCHHHCCC
VSGGDGPVAKLAAISPLHALALGLRADMAAVDANAAVGAARIVPGMGAAAGRDTIYIQLD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHCCCCCCCCCCCEEEEEEC
RRAAPESFVATALRLCGDQPYCKFMGWTNPVLKPDSDAMTDTQRAAMSFSYLRDDKAGFE
CCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
KALWNCSEYKRDDARQCMKR
HHHHCHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA