| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is iorA [H]
Identifier: 103486526
GI number: 103486526
Start: 1071275
End: 1071814
Strand: Reverse
Name: iorA [H]
Synonym: Sala_1037
Alternate gene names: 103486526
Gene position: 1071814-1071275 (Counterclockwise)
Preceding gene: 103486527
Following gene: 103486525
Centisome position: 32.04
GC content: 67.41
Gene sequence:
>540_bases ATGACGCGATTCTCGGTCAACGACCGTCCGGTCGAATATCGCATGGAGCCCGAAACCCCGCTGCTTTGGGCGCTGCGCGA TGCGTCGAACCTTACCGGCACCAAATATGGCTGTGGCACCGGCGATTGCGGTGCCTGCACCGTCGACATCGACGGCGAGG CGATCCGCAGCTGCCTGGTCACCATCGCCGAATGCGAAGGCCGCTTCGTCACGACGATCGAGGGCCTGACGCGCGACCGT AGCCACCCCGTTCAACAGGCGTGGGTCGCCGAACAGGTGCCGCAATGCGGTTTCTGCCAGTCAGGGATGATCATGGCCGC CGCCGTGCTGCTCCGCAAGAACAGCAACCCAAGCGATGCCGAAGTCGATGCCGCGATGACCAATATCTGCCGCTGTGGCA CCTATCCGCGCATTCGCGCCGCGATCCGCCTCGCAGCGCGGGTCATGCGCGGCGAGGAACGCATCGCCGCCGCGCCGCCG CCCGGCATCCGGCCCGAAGACGCCGCGCGCGCGGTACCGGCGCTGCGCCCCGAAAGCTGA
Upstream 100 bases:
>100_bases CCAGTCGGGCAAGGCCGAGTTCGACGCGATGGTACGCAAGGTCGACAAGATCGACACAAGTTGGCGTGACTAATCCGCTC GCTGCGCTAACAGGGGCGGC
Downstream 100 bases:
>100_bases ACCGCGGGCAACGGCGCGGTCAGCCATCGATCATCTTGCCTCGGGTAAGAATCGATTCATCATCCCGGCTGGCGTCTCCA GCGATCGGGACGTGAGTTGG
Product: (2Fe-2S)-binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTRFSVNDRPVEYRMEPETPLLWALRDASNLTGTKYGCGTGDCGACTVDIDGEAIRSCLVTIAECEGRFVTTIEGLTRDR SHPVQQAWVAEQVPQCGFCQSGMIMAAAVLLRKNSNPSDAEVDAAMTNICRCGTYPRIRAAIRLAARVMRGEERIAAAPP PGIRPEDAARAVPALRPES
Sequences:
>Translated_179_residues MTRFSVNDRPVEYRMEPETPLLWALRDASNLTGTKYGCGTGDCGACTVDIDGEAIRSCLVTIAECEGRFVTTIEGLTRDR SHPVQQAWVAEQVPQCGFCQSGMIMAAAVLLRKNSNPSDAEVDAAMTNICRCGTYPRIRAAIRLAARVMRGEERIAAAPP PGIRPEDAARAVPALRPES >Mature_178_residues TRFSVNDRPVEYRMEPETPLLWALRDASNLTGTKYGCGTGDCGACTVDIDGEAIRSCLVTIAECEGRFVTTIEGLTRDRS HPVQQAWVAEQVPQCGFCQSGMIMAAAVLLRKNSNPSDAEVDAAMTNICRCGTYPRIRAAIRLAARVMRGEERIAAAPPP GIRPEDAARAVPALRPES
Specific function: Specific towards N-containing N-heterocyclic substrates, including isoquinoline, isoquinolin-5-ol, phthalazine and quinazoline [H]
COG id: COG2080
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]
Homologues:
Organism=Homo sapiens, GI91823271, Length=158, Percent_Identity=40.5063291139241, Blast_Score=75, Evalue=2e-14, Organism=Homo sapiens, GI71773480, Length=146, Percent_Identity=45.8904109589041, Blast_Score=68, Evalue=4e-12, Organism=Escherichia coli, GI1786480, Length=160, Percent_Identity=37.5, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789232, Length=139, Percent_Identity=41.0071942446043, Blast_Score=89, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17540638, Length=151, Percent_Identity=40.3973509933775, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17539860, Length=152, Percent_Identity=37.5, Blast_Score=105, Evalue=9e-24, Organism=Caenorhabditis elegans, GI32566215, Length=152, Percent_Identity=36.8421052631579, Blast_Score=102, Evalue=1e-22, Organism=Drosophila melanogaster, GI17737937, Length=146, Percent_Identity=39.7260273972603, Blast_Score=94, Evalue=3e-20, Organism=Drosophila melanogaster, GI24647199, Length=153, Percent_Identity=33.9869281045752, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24647195, Length=158, Percent_Identity=33.5443037974684, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24647197, Length=158, Percent_Identity=33.5443037974684, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24647193, Length=133, Percent_Identity=35.3383458646617, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24647201, Length=153, Percent_Identity=31.3725490196078, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002888 - InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR001041 [H]
Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]
EC number: =1.3.99.16 [H]
Molecular weight: Translated: 19396; Mature: 19265
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 8.4 %Cys+Met (Translated Protein) 5.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRFSVNDRPVEYRMEPETPLLWALRDASNLTGTKYGCGTGDCGACTVDIDGEAIRSCLV CCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH TIAECEGRFVTTIEGLTRDRSHPVQQAWVAEQVPQCGFCQSGMIMAAAVLLRKNSNPSDA HHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCH EVDAAMTNICRCGTYPRIRAAIRLAARVMRGEERIAAAPPPGIRPEDAARAVPALRPES HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHCCCCCCCCC >Mature Secondary Structure TRFSVNDRPVEYRMEPETPLLWALRDASNLTGTKYGCGTGDCGACTVDIDGEAIRSCLV CCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH TIAECEGRFVTTIEGLTRDRSHPVQQAWVAEQVPQCGFCQSGMIMAAAVLLRKNSNPSDA HHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCH EVDAAMTNICRCGTYPRIRAAIRLAARVMRGEERIAAAPPPGIRPEDAARAVPALRPES HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7782304; 8157655 [H]