| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486520
Identifier: 103486520
GI number: 103486520
Start: 1065202
End: 1066893
Strand: Reverse
Name: 103486520
Synonym: Sala_1031
Alternate gene names: NA
Gene position: 1066893-1065202 (Counterclockwise)
Preceding gene: 103486525
Following gene: 103486519
Centisome position: 31.89
GC content: 61.94
Gene sequence:
>1692_bases ATGCCTATCCCCCCCCCGCTCAAGGTCGCCGGCCTTGCCGCGCTGGCGTTGCTCGCCGCGTGCAACGGCAGCGCCGACCC ACAGAAAAATGCCGCCACCGCGATCCCCGATGTCGAGATTCCCCAACTATCGCTCGCAACCTTGCAGGAAGTAACGAGAG AATTGTCGTCCGACGCCTATGAAGGGCGTGCGCCCGGCACCGCGGGCGAAGAAAAGACCGTCGCCTACATCATCAAGAAA TACAGGGAAGCGGGCTTGCAGCCCGGCAACAACGGCCGCTGGACACAGGACGTGCCGCTGGTTGAAATCACCGCGAAGAA CGCCACCCCGCTGACCTTCACCGGCGGCAAGACGCCCGTGACGGCACAATATGCCAAGGATTATGTCGCGTTCAGCTACC GCGTCCAGCCGAGGACCGAAGTCAAGGACAGCGACGTCGTGTTCGTGGGATATGGCATCAATGCCCCCGAAAAGGGCTGG AACGACTATGCCGGGCTGGATGTGAAGGGCAAGACGGTCGTTGTCCTGGTGAACGATCCCGACTGGGAAAACAGGGAAAC CGAAGGCCCGTTCAACGGCCGCGCCATGACCTATTACGGCCGCTGGTCATACAAATATGAGGAAGCTGCGCGGCAGGGAG CCGCCGCCGTGCTGATCGTTCACGACACCGAGCCTGCCGCCTATGGCTGGAACGTCGTCGAATCGAGCAATACGGGCACG CAATATCTGGCCGAAAGCAAGAATGGCGGCGCCGACCAAACGATTGCCAATGGCTGGATCCAGTTGGCCAAGGCGAAGGA ACTCTTCGCAAGCGCGGGACAGGATTTCGACAAGCTGCGCGAGGCGGCGAAACAAAAGGGGTTCAAGCCCGTGCCGCTGG CCGGGGTGAAGGCGAGCTTTGCCTTCGACAATGACATCGCCAAGAAAATGTCGCGCAACGTCATCGGTGTGCTGCCGGGC GCCAAGCGGCCCGACGAATATGTGCTTTACACGGGTCATTGGGATCATCTGGGCCGCTGCACGCCCGTCGACGGCGACGA CATCTGCAACGGCGCGGTCGACAATGCGAGCGGTATCGCAGGGCTCGTGACGCTGGCGAAGGCGTTCAAGCAGGCGGGCG CGCCCGATCGCAGCATCGTCTTTCTTGCCGTCACCGCCGAGGAATCGGGCCTGCTCGGATCGAAATACTACGCCGAAAAC CCGGTCTTCCCATTGTCGCAGACGGTCGGCGGCGTGAATATGGATGCGCTGAACGCGGTCGGGCCGGCGAAGGACATCGT CGTGGTCGGGGCCGGCAAGTCCGAACTTGACGCCTATGTCGAGAAACTCGCCCGGATGGAGGGTCGCACGGTCAAGCCCG AACCGACCCCCGAAAAGGGTTTCTATTACCGGTCGGATCATTTCAGCTTCGCCAAGCTGGGCGTCCCGATGTTCAATTTC GGCAGCGGCGACGATCTGGTCGATGGCGGCGTCGAGGCGGGTCAGAAAGCGGCCGAAGACTATGAAAAGAATCGCTATCA CGCCCCCGACGACGAATATGAGGCGATCACCAACTGGGAGGGCATGATGTCGGACCTGCGCCTCTATTATGCGGCGGGGC GGATGCTCGCGATGACCGATGCGTGGCCGAACTGGAACGAAGGCGACGAGTTCCGCGCCGCCCGCGACAAGTCGCGCGCC GCAGCAAAATAA
Upstream 100 bases:
>100_bases TCGCGCCCGTTTGGGGGGCAGCGGACGTTGCCGGCGCTTGATAGTTGCACCGTCGCTCGCGCTCTGGCAGGGTCGTAACA TTATTACAAAGAGGAGCCTT
Downstream 100 bases:
>100_bases TCCGGAAAGCGCGCGCCCATGACGCTGAGAATGCCTGCCGAATGGGCGCCGCACAGGGCCGTCTGGATCGGTTTCCCGCA CCTCGCTGAGGAGTGGGCGG
Product: peptidase M28
Products: NA
Alternate protein names: Aminopeptidase; Peptidase; M28 Family Peptidase; Peptidase Family M; Glutamate Carboxypeptidase II; M20/M25/M40 Family Peptidase; Aminopeptidase Family; M28 Family Aminopeptidase; M23B Family Peptidase; Aminopeptidase Y; Component Of l Biopolymer Transport System; WD40-Like Beta Propeller; PDZ Domain-Containing Protein
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MPIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAYEGRAPGTAGEEKTVAYIIKK YREAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPVTAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGW NDYAGLDVKGKTVVVLVNDPDWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGT QYLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASFAFDNDIAKKMSRNVIGVLPG AKRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIAGLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAEN PVFPLSQTVGGVNMDALNAVGPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNF GSGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTDAWPNWNEGDEFRAARDKSRA AAK
Sequences:
>Translated_563_residues MPIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAYEGRAPGTAGEEKTVAYIIKK YREAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPVTAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGW NDYAGLDVKGKTVVVLVNDPDWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGT QYLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASFAFDNDIAKKMSRNVIGVLPG AKRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIAGLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAEN PVFPLSQTVGGVNMDALNAVGPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNF GSGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTDAWPNWNEGDEFRAARDKSRA AAK >Mature_562_residues PIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAYEGRAPGTAGEEKTVAYIIKKY REAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPVTAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGWN DYAGLDVKGKTVVVLVNDPDWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGTQ YLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASFAFDNDIAKKMSRNVIGVLPGA KRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIAGLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAENP VFPLSQTVGGVNMDALNAVGPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNFG SGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTDAWPNWNEGDEFRAARDKSRAA AK
Specific function: Unknown
COG id: COG2234
COG function: function code R; Predicted aminopeptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60823; Mature: 60691
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAY CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC EGRAPGTAGEEKTVAYIIKKYREAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPV CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCE TAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGWNDYAGLDVKGKTVVVLVNDP EHHHHCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCEEEEEECCC DWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGT CCCCCCCCCCCCCCEEEEEECCCEEHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCCCH QYLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASF HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEE AFDNDIAKKMSRNVIGVLPGAKRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIA ECCHHHHHHHHCCEEEECCCCCCCCCEEEEECCHHHCCCCCCCCCHHHCCCCCCCCCHHH GLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAENPVFPLSQTVGGVNMDALNAV HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCHHHHCCCCCHHHHHCC GPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNF CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHCCCEEEC GSGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTD CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEEEC AWPNWNEGDEFRAARDKSRAAAK CCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure PIPPPLKVAGLAALALLAACNGSADPQKNAATAIPDVEIPQLSLATLQEVTRELSSDAY CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC EGRAPGTAGEEKTVAYIIKKYREAGLQPGNNGRWTQDVPLVEITAKNATPLTFTGGKTPV CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCE TAQYAKDYVAFSYRVQPRTEVKDSDVVFVGYGINAPEKGWNDYAGLDVKGKTVVVLVNDP EHHHHCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCEEEEEECCC DWENRETEGPFNGRAMTYYGRWSYKYEEAARQGAAAVLIVHDTEPAAYGWNVVESSNTGT CCCCCCCCCCCCCCEEEEEECCCEEHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCCCH QYLAESKNGGADQTIANGWIQLAKAKELFASAGQDFDKLREAAKQKGFKPVPLAGVKASF HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEE AFDNDIAKKMSRNVIGVLPGAKRPDEYVLYTGHWDHLGRCTPVDGDDICNGAVDNASGIA ECCHHHHHHHHCCEEEECCCCCCCCCEEEEECCHHHCCCCCCCCCHHHCCCCCCCCCHHH GLVTLAKAFKQAGAPDRSIVFLAVTAEESGLLGSKYYAENPVFPLSQTVGGVNMDALNAV HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCHHHHCCCCCHHHHHCC GPAKDIVVVGAGKSELDAYVEKLARMEGRTVKPEPTPEKGFYYRSDHFSFAKLGVPMFNF CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHCCCEEEC GSGDDLVDGGVEAGQKAAEDYEKNRYHAPDDEYEAITNWEGMMSDLRLYYAAGRMLAMTD CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEEEC AWPNWNEGDEFRAARDKSRAAAK CCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA