| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fyuA [H]
Identifier: 103486499
GI number: 103486499
Start: 1036125
End: 1038434
Strand: Direct
Name: fyuA [H]
Synonym: Sala_1010
Alternate gene names: 103486499
Gene position: 1036125-1038434 (Clockwise)
Preceding gene: 103486489
Following gene: 103486500
Centisome position: 30.97
GC content: 59.78
Gene sequence:
>2310_bases ATGGTGGGAGGGAGAGTGTTTATGAAAACGCATTTGATCGCGCTGTTTGCGGCATCCGCGCTTGTCAGCCCTGTTGTCGC CTTTGCCCAGGAAACGCCCGCCGCCGACGATCAGGGGGGGCTCGAGGAAATCATCGTCACCGCGCAAAAACGCGCCGAGG GGCTGTCCGACGTGCCGATCTCGATCTCAGCGGTCAGCGGCAAGCAGGTCGAAAATTACGGGCAGACCAATCTTGAACAA ATCTCGTCCTCGGTCCCGAACCTCAAGATCACCCAGACGGCGATCGCCAACCGTATCGCGATTCGCGGCATCGCATCGGG CGACAACAAGGGGTTCGAACAATCGGTCGCGATGTTCGTCGACGGCGTCTATTACGGTCGCGACCAGCTCTCGCGCCTGC CGCTCGTCGACATGGAGCGCGTCGAGGTGCTGCGCGGGCCGCAGCCGACCCTGTTCGGGAAAAATGCCATTGCCGGCGCG GTCAATATCACGACGCGCGGCCCGACCGACACATTCGAAGGGTCGGTCAGCGGTCTTTACGAGTTCAACCACAAGGAATT GCAGCTGACCGGCGTGCTGTCGGGACCGCTGAGCGACGGCGTCGAGGCGCGCGTCGTGGGCTATCATCGCTCGATGGACG GCTATTTCTATAATCAGGAGCTCGATCGCGACGAACCCAATGTCGATGAGTATTATTTTCGCGGCAAGGTCGAACTGGAC AAGGGCGGACCGTTCGCGGCCGAACTGAAACTGGAATATGCCGACTTTGAAATGAAGGGCCAGCCGCGCGACGTCTTCGG CGCGGTCGGCAATTACAACGCGGTTTTCCAGGGTCCCTTCTTCGTCAGCACCGACCCCGATTTTGTCCGCGAGGACAATG GTTATGAAAGCCGAAACAAGGTGTTCGGTGCCACACTTAATGTCGACTTCGAAATCGGCGATCACACGTTGACCGCCGTG TCGGCCTTGCTCGATTACAAGACGCGCGAAATTGTCGACGTCGATTTTTCGGGCATCAGCTTCCTTGATGGCACCAATTT GCGTGAGGATTACCGCCAGTTCAGCCAGGAACTGCGGCTGACCTCGCCGGGTGGCGAGGTGTTCGACTATATCGCCGGGG TCTATTATCAGCACGCCAAACTCGACGTGCAGGATTTCACCCTGTTCAATCCGACCTTCCTCGCGCTCGGCGCGCCCTTC AATGCGTTGGGCGACACCAGCAACGACCGCGATTACACGCAGAAATCCGATCTGATCTCCGCCTTTGCGCAAGGTGAATT ATCGGTCACCGACCAGCTGCGCATTACTGCGGGCGCGCGGTTCAACCATGAGAAGAAGAGCGGCAGCCGCAGCCTGGCGA TCGTCCAGGGGCCGCTCAGCACGGCGCCCGCAGCGGTCGTTGCGGCCGTGTTCCGGGCGCTCAATATCGAAACGCACAGC ATCTCCGGCAAGATCAGCGAAGACAGCTTCAATCCGATGGTCAACGTCCAGTATGACGCGACCGATGACCTGATGGTCTA TGCCTCCTATGCCAAGGGCACGAAGGCGGGCGGTTTCGACATAAGGTCGAACTCGCTGCCGACCTCGACGACCGTGGCGC GGCCCGGCGCCTTTGTCTTCGAGGACGAAAGCGCAGACAATTTCGAGGCCGGCCTGAAATATAAAGGGCGCAATGTCGCT TTCAACGTCTCGCTCTATCGCACCGATTACAAGGATCTTCAGGTCAATATCTTCGACGGCACGCTGAACTTCAACGTCCG CAACGCTGCTGAAGCGCGGACGCAGGGGGTGGAGGCCGATTTCCGCGCGGCGCTCGCGCCGGGGCTGACGGTCAGCGGCG CGGTCGCCTATCTCGACTTCAAGTTCACCAATTTCACCGAGGGCCAATGTTTTTATCTGCAGGTGCCCGGACCGAATGGC CTGTGCGATTATTCCGGCAAGCGAAACGCCTTGAGCCCCGAATGGTCGGGCAATTTGAACCTCGACTACACGACGCCGGT GACGAACGAGATGAAGGTCGCGCTCAACATCAACGCCGATTTCTCCTCTTCCTATATCGCCGCGGTAAACCTCGATCCGC GTACGCATCAGGACGGATATGTAAAGCTGGGCGCGCGGTTTGCGCTGGCCGACGTTGATGATCGCTGGGAGGTCGCGCTG ATCGGCCGTAACCTCACCAACCAGCGGATATTGCAGACGGCGAGTTCGATGCCGCTCGCCACGACGATCACGCGAGGGGC GGGCAATGCCTATAACGGCATCGTCGACCGCCCGCGCACGATCGCGGTGCAACTGACGGGGCGCTTTTGA
Upstream 100 bases:
>100_bases CGACACCTTCATGCTCTCCCAAATTATCTCACTTGCATAACGATACTTAAAGACGATAAGACTCGCAAGGCCAGAAAAGC ATCGCGGGGACAACCCGACG
Downstream 100 bases:
>100_bases GGTTATCGTTTCAATTGCGGTCCGCCTTGTCATAAAGACGTCATCCCGGCGAAGGCCGGGATAACGAACGGGGTTGGGAA AGCGAGTGAAACACGACCGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPISISAVSGKQVENYGQTNLEQ ISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFVDGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGA VNITTRGPTDTFEGSVSGLYEFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNKVFGATLNVDFEIGDHTLTAV SALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRLTSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPF NALGDTSNDRDYTQKSDLISAFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVFEDESADNFEAGLKYKGRNVA FNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEADFRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNG LCDYSGKRNALSPEWSGNLNLDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF
Sequences:
>Translated_769_residues MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPISISAVSGKQVENYGQTNLEQ ISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFVDGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGA VNITTRGPTDTFEGSVSGLYEFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNKVFGATLNVDFEIGDHTLTAV SALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRLTSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPF NALGDTSNDRDYTQKSDLISAFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVFEDESADNFEAGLKYKGRNVA FNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEADFRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNG LCDYSGKRNALSPEWSGNLNLDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF >Mature_769_residues MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPISISAVSGKQVENYGQTNLEQ ISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFVDGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGA VNITTRGPTDTFEGSVSGLYEFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNKVFGATLNVDFEIGDHTLTAV SALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRLTSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPF NALGDTSNDRDYTQKSDLISAFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVFEDESADNFEAGLKYKGRNVA FNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEADFRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNG LCDYSGKRNALSPEWSGNLNLDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=198, Percent_Identity=29.2929292929293, Blast_Score=79, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83871; Mature: 83871
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPI CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE SISAVSGKQVENYGQTNLEQISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFV EEEECCCCHHHHCCCCCHHHHHHCCCCEEEEHHHHHCEEEEEEECCCCCCCHHHHHHHHH DGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGAVNITTRGPTDTFEGSVSGLY CCEEECHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEE EFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD EECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCEEEEEEEEEC KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNK CCCCEEEEEEEEEECEEECCCCHHHHHCCCCCCEEEECCEEECCCCHHHCCCCCCCCCCE VFGATLNVDFEIGDHTLTAVSALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRL EEEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHEEE TSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPFNALGDTSNDRDYTQKSDLIS ECCCHHHHHHHHHHHHHHEEECHHHEEEECCEEEEECCCCHHCCCCCCCCCHHHHHHHHH AFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS HHHCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEE ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVF CCCEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEECCCCEEEE EDESADNFEAGLKYKGRNVAFNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEAD ECCCCCCCCCCCEECCCEEEEEEEEEECCCCEEEEEEEECEEEEEECCHHHHHHCCCCHH FRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNGLCDYSGKRNALSPEWSGNLN HHHHHCCCCEECCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE LDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL EEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCEEEEE IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF ECCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC >Mature Secondary Structure MVGGRVFMKTHLIALFAASALVSPVVAFAQETPAADDQGGLEEIIVTAQKRAEGLSDVPI CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE SISAVSGKQVENYGQTNLEQISSSVPNLKITQTAIANRIAIRGIASGDNKGFEQSVAMFV EEEECCCCHHHHCCCCCHHHHHHCCCCEEEEHHHHHCEEEEEEECCCCCCCHHHHHHHHH DGVYYGRDQLSRLPLVDMERVEVLRGPQPTLFGKNAIAGAVNITTRGPTDTFEGSVSGLY CCEEECHHHHCCCCCCCHHHHHHHCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEE EFNHKELQLTGVLSGPLSDGVEARVVGYHRSMDGYFYNQELDRDEPNVDEYYFRGKVELD EECCCEEEEEEEECCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCEEEEEEEEEC KGGPFAAELKLEYADFEMKGQPRDVFGAVGNYNAVFQGPFFVSTDPDFVREDNGYESRNK CCCCEEEEEEEEEECEEECCCCHHHHHCCCCCCEEEECCEEECCCCHHHCCCCCCCCCCE VFGATLNVDFEIGDHTLTAVSALLDYKTREIVDVDFSGISFLDGTNLREDYRQFSQELRL EEEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHEEE TSPGGEVFDYIAGVYYQHAKLDVQDFTLFNPTFLALGAPFNALGDTSNDRDYTQKSDLIS ECCCHHHHHHHHHHHHHHEEECHHHEEEECCEEEEECCCCHHCCCCCCCCCHHHHHHHHH AFAQGELSVTDQLRITAGARFNHEKKSGSRSLAIVQGPLSTAPAAVVAAVFRALNIETHS HHHCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEE ISGKISEDSFNPMVNVQYDATDDLMVYASYAKGTKAGGFDIRSNSLPTSTTVARPGAFVF CCCEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCCCCEECCCCEEEE EDESADNFEAGLKYKGRNVAFNVSLYRTDYKDLQVNIFDGTLNFNVRNAAEARTQGVEAD ECCCCCCCCCCCEECCCEEEEEEEEEECCCCEEEEEEEECEEEEEECCHHHHHHCCCCHH FRAALAPGLTVSGAVAYLDFKFTNFTEGQCFYLQVPGPNGLCDYSGKRNALSPEWSGNLN HHHHHCCCCEECCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE LDYTTPVTNEMKVALNINADFSSSYIAAVNLDPRTHQDGYVKLGARFALADVDDRWEVAL EEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCEEEEE IGRNLTNQRILQTASSMPLATTITRGAGNAYNGIVDRPRTIAVQLTGRF ECCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA