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The map label for this gene is 103486497

Identifier: 103486497

GI number: 103486497

Start: 1033569

End: 1035065

Strand: Reverse

Name: 103486497

Synonym: Sala_1008

Alternate gene names: NA

Gene position: 1035065-1033569 (Counterclockwise)

Preceding gene: 103486498

Following gene: 103486496

Centisome position: 30.94

GC content: 61.66

Gene sequence:

>1497_bases
ATGACCGCCCAGCTTGTCGAAACGATCCAGTCGACGCTTCAGCCGAACGACCATCCCTATATGCAGGGTGCGTGGCGTCC
GACCTATAATGAGTGGAACGCGATATTTTCCAATGGCGATGCCGAGGTGATCGGGACGATCCCCGATGACATCGACGGCG
TCTATGTTCGCACCGGCGAGAACCAGATTCACGAGCCGATCGGCCGTTACCACCCCTTCGACGGCGATGGTTTCATTCAC
GCCATCTCGTTCAAAGGAGGCCGCGCGAGCTATCGCAGCCGCTTCGTGCGGACCAAGGGATTCGCGGCCGAGAAGGAAGC
CGGGCGTTCGTTATGGGCGGGCCTGATGGAGCCGCCGCACAAGTCGACGCGCCCCGGCTGGGGGGCGCAGGAGTGGCTCA
AGGATTCCTCCTCGACCGATGTGGCGATCCATGCGGGGAAGATCATCTCGACCTTCTATCAGTGCGGCGAAGCCTACCGG
CTCGATCCCTTCACGCTCGAACAGTTCGGCACCGAAAGCTGGGTGCCGCTCGACGGCATTTCGGCGCATTGCAAGGTCGA
CCTCGCGACGGGCGAGCTGATGTTCTTCAATTACTCGAAACACGCCCCCTACATGCACTACGGTGTCGTCGGCGCGGACA
ACAAGCTCAAACATTATATCCCGGTGCCGCTGCCCGGACCACGGCTGCCGCACGACATGGCGTTCACCGAACATTACACG
ATCCTCAACGACATGCCGCTCTATTGGAATGAGGAGCTGCTCAAAAAGAATCTGCACGTCGTCCAGTTCCACCCCGACCA
GAAAACGCGCTTCGCGATCATCCCGCGCCACGGCCAGCCCGAAGACATCCGCTGGTTCGAGGCCGAGCCGACCTACACGC
TCCACTGGCTCAACGCCTGGGAGGAAGGCGACGAGATCATCCTCGACGGCTATTATCAGGAAGAGCCGATGCCCAAATCC
TATCCGAACGCGCCCGAGGGGCTCGAACGGATGATGGCCTATCTCGATCAGGGGCTTTTGAAGCCGCGCCTCCACCGCTG
GCGCTTCAACCTCAAGACCGGCGCGACGGTCGAGGAGCGGCTTGACGACCGCGATCTTGAGTTCGGCATGTTCAATCATC
GCTACGCGGGCAAGCCCTATCGCTACGCCTATAGCGCGATCCCCGAGCCCGGCTGGTTCCTGTTTCGCGGGATCGTCAAG
CACGATCTCGATTCCCGGACGAGCGAGGCATATGAGTTCGGCCGCGGTCGTTTCGGCAGCGAGGCACCGTTCGCGCCGCG
CATCGGCGCCAGGGACGAGGACGACGGCTACCTCGTATCCTTCATCGCGGATCTTGAAACCGACCAGTCCGAATGCGTGC
TGATCGACGCGAAGAATATAACGGCGGGGCCGGTGTGCCGGATCATCCTGCCCGAGCGCATCTGTTCGGGCACGCACAGC
GTGTGGGCGAGCGGCAATGATATCGGCATGGGCGAAAACAGCGTGCTGGCCGCCTGA

Upstream 100 bases:

>100_bases
GCGGCGTCGAACCCGTCGCGGCGATCGTCGACCGCCTCCTGTCCGAATATGATGCCGCTGCCGCCCGGCCGCGCTTTGCC
CCCGCCGAAGGAGCCCTTGC

Downstream 100 bases:

>100_bases
GATGATCGTCGCGGGAGAGGATAAACGGCGGCGTTATCGGCAAAGCGGCTGGTGGGGCGACCAGAGCTTTGCCGACCTGT
TCGCGGCCAATGCGGCGGCG

Product: carotenoid oxygenase

Products: NA

Alternate protein names: ACO; 8'-apo-beta-carotenal 15,15'-oxygenase; Diox1 [H]

Number of amino acids: Translated: 498; Mature: 497

Protein sequence:

>498_residues
MTAQLVETIQSTLQPNDHPYMQGAWRPTYNEWNAIFSNGDAEVIGTIPDDIDGVYVRTGENQIHEPIGRYHPFDGDGFIH
AISFKGGRASYRSRFVRTKGFAAEKEAGRSLWAGLMEPPHKSTRPGWGAQEWLKDSSSTDVAIHAGKIISTFYQCGEAYR
LDPFTLEQFGTESWVPLDGISAHCKVDLATGELMFFNYSKHAPYMHYGVVGADNKLKHYIPVPLPGPRLPHDMAFTEHYT
ILNDMPLYWNEELLKKNLHVVQFHPDQKTRFAIIPRHGQPEDIRWFEAEPTYTLHWLNAWEEGDEIILDGYYQEEPMPKS
YPNAPEGLERMMAYLDQGLLKPRLHRWRFNLKTGATVEERLDDRDLEFGMFNHRYAGKPYRYAYSAIPEPGWFLFRGIVK
HDLDSRTSEAYEFGRGRFGSEAPFAPRIGARDEDDGYLVSFIADLETDQSECVLIDAKNITAGPVCRIILPERICSGTHS
VWASGNDIGMGENSVLAA

Sequences:

>Translated_498_residues
MTAQLVETIQSTLQPNDHPYMQGAWRPTYNEWNAIFSNGDAEVIGTIPDDIDGVYVRTGENQIHEPIGRYHPFDGDGFIH
AISFKGGRASYRSRFVRTKGFAAEKEAGRSLWAGLMEPPHKSTRPGWGAQEWLKDSSSTDVAIHAGKIISTFYQCGEAYR
LDPFTLEQFGTESWVPLDGISAHCKVDLATGELMFFNYSKHAPYMHYGVVGADNKLKHYIPVPLPGPRLPHDMAFTEHYT
ILNDMPLYWNEELLKKNLHVVQFHPDQKTRFAIIPRHGQPEDIRWFEAEPTYTLHWLNAWEEGDEIILDGYYQEEPMPKS
YPNAPEGLERMMAYLDQGLLKPRLHRWRFNLKTGATVEERLDDRDLEFGMFNHRYAGKPYRYAYSAIPEPGWFLFRGIVK
HDLDSRTSEAYEFGRGRFGSEAPFAPRIGARDEDDGYLVSFIADLETDQSECVLIDAKNITAGPVCRIILPERICSGTHS
VWASGNDIGMGENSVLAA
>Mature_497_residues
TAQLVETIQSTLQPNDHPYMQGAWRPTYNEWNAIFSNGDAEVIGTIPDDIDGVYVRTGENQIHEPIGRYHPFDGDGFIHA
ISFKGGRASYRSRFVRTKGFAAEKEAGRSLWAGLMEPPHKSTRPGWGAQEWLKDSSSTDVAIHAGKIISTFYQCGEAYRL
DPFTLEQFGTESWVPLDGISAHCKVDLATGELMFFNYSKHAPYMHYGVVGADNKLKHYIPVPLPGPRLPHDMAFTEHYTI
LNDMPLYWNEELLKKNLHVVQFHPDQKTRFAIIPRHGQPEDIRWFEAEPTYTLHWLNAWEEGDEIILDGYYQEEPMPKSY
PNAPEGLERMMAYLDQGLLKPRLHRWRFNLKTGATVEERLDDRDLEFGMFNHRYAGKPYRYAYSAIPEPGWFLFRGIVKH
DLDSRTSEAYEFGRGRFGSEAPFAPRIGARDEDDGYLVSFIADLETDQSECVLIDAKNITAGPVCRIILPERICSGTHSV
WASGNDIGMGENSVLAA

Specific function: Cleaves a number of carotenals and carotenols in the all-trans configuration at the 15-15' double bond producing retinal or retinol, respectively. Also shows activity toward lycopenals and the corresponding alcohols. Does not cleave beta- carotene or lyco

COG id: COG3670

COG function: function code Q; Lignostilbene-alpha,beta-dioxygenase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid oxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004294 [H]

Pfam domain/function: PF03055 RPE65 [H]

EC number: =1.14.99.41 [H]

Molecular weight: Translated: 56675; Mature: 56544

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQLVETIQSTLQPNDHPYMQGAWRPTYNEWNAIFSNGDAEVIGTIPDDIDGVYVRTGE
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEECCCCEEEECCCCCCCEEEEECCC
NQIHEPIGRYHPFDGDGFIHAISFKGGRASYRSRFVRTKGFAAEKEAGRSLWAGLMEPPH
CHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
KSTRPGWGAQEWLKDSSSTDVAIHAGKIISTFYQCGEAYRLDPFTLEQFGTESWVPLDGI
CCCCCCCCHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCCEEHHHCCCCCCCCCCCC
SAHCKVDLATGELMFFNYSKHAPYMHYGVVGADNKLKHYIPVPLPGPRLPHDMAFTEHYT
CCEEEEEEECCEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHCEE
ILNDMPLYWNEELLKKNLHVVQFHPDQKTRFAIIPRHGQPEDIRWFEAEPTYTLHWLNAW
EECCCCCCCCHHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEECC
EEGDEIILDGYYQEEPMPKSYPNAPEGLERMMAYLDQGLLKPRLHRWRFNLKTGATVEER
CCCCEEEEECEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHHH
LDDRDLEFGMFNHRYAGKPYRYAYSAIPEPGWFLFRGIVKHDLDSRTSEAYEFGRGRFGS
CCCCCCEECCCCCCCCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
EAPFAPRIGARDEDDGYLVSFIADLETDQSECVLIDAKNITAGPVCRIILPERICSGTHS
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEHHHHCCCCCC
VWASGNDIGMGENSVLAA
EEECCCCCCCCCCCEECC
>Mature Secondary Structure 
TAQLVETIQSTLQPNDHPYMQGAWRPTYNEWNAIFSNGDAEVIGTIPDDIDGVYVRTGE
CHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEECCCCEEEECCCCCCCEEEEECCC
NQIHEPIGRYHPFDGDGFIHAISFKGGRASYRSRFVRTKGFAAEKEAGRSLWAGLMEPPH
CHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
KSTRPGWGAQEWLKDSSSTDVAIHAGKIISTFYQCGEAYRLDPFTLEQFGTESWVPLDGI
CCCCCCCCHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCCEEHHHCCCCCCCCCCCC
SAHCKVDLATGELMFFNYSKHAPYMHYGVVGADNKLKHYIPVPLPGPRLPHDMAFTEHYT
CCEEEEEEECCEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHCEE
ILNDMPLYWNEELLKKNLHVVQFHPDQKTRFAIIPRHGQPEDIRWFEAEPTYTLHWLNAW
EECCCCCCCCHHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCEEEECCCCEEEEEEECC
EEGDEIILDGYYQEEPMPKSYPNAPEGLERMMAYLDQGLLKPRLHRWRFNLKTGATVEER
CCCCEEEEECEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHHH
LDDRDLEFGMFNHRYAGKPYRYAYSAIPEPGWFLFRGIVKHDLDSRTSEAYEFGRGRFGS
CCCCCCEECCCCCCCCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
EAPFAPRIGARDEDDGYLVSFIADLETDQSECVLIDAKNITAGPVCRIILPERICSGTHS
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEEHHHHCCCCCC
VWASGNDIGMGENSVLAA
EEECCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]