| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486478
Identifier: 103486478
GI number: 103486478
Start: 1015092
End: 1015778
Strand: Reverse
Name: 103486478
Synonym: Sala_0989
Alternate gene names: NA
Gene position: 1015778-1015092 (Counterclockwise)
Preceding gene: 103486479
Following gene: 103486477
Centisome position: 30.37
GC content: 68.27
Gene sequence:
>687_bases ATGCCACGCAAGGTCAACCATGTGAGCGCCGAGGACCATCGCATCGTCACCGACGCGGTCGCGGCGGCCGAGCGCCACAC CGACGGCGAGATCGTCACGATCATCGCCGCGCGGTCGAGCGATTATGACGATGTCGCGCTCGTCTGGGCGAGCGTCGGCG CCTTCCTCGCCATGTCGCTCGTCGCGCTGTTTCCCGATTTCTATCGCGGGCTTTACGATGCCCTGCGCGGCGGCTGGGGG CACGAGCCGACCACGAACGAGTGGCTGGGGACGATCATCGCCTTTGGCGTCGTCAAATGGATCGGCATCTGGCTGATCCT GCTCTGGCGTCCGCTGCGGCTCGCGCTGACACCGCGGTCGATCAAGGCCGCGCGGGCCCGCGCGCGCGCGATCGACCTGT TCAAGGTCGGCACCGAGGCGAAGACGGCCGGCCGCACCGGCGTCGTCCTCTACGTCAGCCTTGCCGAACATCGCGCCGAC ATCGTCGCCGACGAAGCGATCGCGTCGAAGGTCGCGCCCGCCATCTGGGGCGACGCGATGGCCGCGCTGATCGAACGCAT CCGCGCGGGCCAGCCCGGCGAAGGCATGGCGGAAGCGGTGCGACAGGTCGGGGCGGTGCTTGCGACGCATTTCCCGAAGA GCGACGGCAATCCCAACGAGCTGTGCGACCGGCTGATCGAGATTTGA
Upstream 100 bases:
>100_bases GTGGCGGCGGTTTCGGCGGTGGCGGCTTCGGCGGCTTTTCGGGCGGCGGCGGCAGCTTCGGCGGCGGCGGCGCGTCGGGC GGCTGGTAGGAGCACGGGAC
Downstream 100 bases:
>100_bases CATGACCCGCCCTGCTCCCGACTCGCCCATCGAGACGCGCTGGGAAGGCCGCTTCGTCACGGTCAAGCAGCAGGGAAACT GGGAATATGTCGCGCGCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MPRKVNHVSAEDHRIVTDAVAAAERHTDGEIVTIIAARSSDYDDVALVWASVGAFLAMSLVALFPDFYRGLYDALRGGWG HEPTTNEWLGTIIAFGVVKWIGIWLILLWRPLRLALTPRSIKAARARARAIDLFKVGTEAKTAGRTGVVLYVSLAEHRAD IVADEAIASKVAPAIWGDAMAALIERIRAGQPGEGMAEAVRQVGAVLATHFPKSDGNPNELCDRLIEI
Sequences:
>Translated_228_residues MPRKVNHVSAEDHRIVTDAVAAAERHTDGEIVTIIAARSSDYDDVALVWASVGAFLAMSLVALFPDFYRGLYDALRGGWG HEPTTNEWLGTIIAFGVVKWIGIWLILLWRPLRLALTPRSIKAARARARAIDLFKVGTEAKTAGRTGVVLYVSLAEHRAD IVADEAIASKVAPAIWGDAMAALIERIRAGQPGEGMAEAVRQVGAVLATHFPKSDGNPNELCDRLIEI >Mature_227_residues PRKVNHVSAEDHRIVTDAVAAAERHTDGEIVTIIAARSSDYDDVALVWASVGAFLAMSLVALFPDFYRGLYDALRGGWGH EPTTNEWLGTIIAFGVVKWIGIWLILLWRPLRLALTPRSIKAARARARAIDLFKVGTEAKTAGRTGVVLYVSLAEHRADI VADEAIASKVAPAIWGDAMAALIERIRAGQPGEGMAEAVRQVGAVLATHFPKSDGNPNELCDRLIEI
Specific function: Unknown
COG id: COG3762
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24729; Mature: 24598
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKVNHVSAEDHRIVTDAVAAAERHTDGEIVTIIAARSSDYDDVALVWASVGAFLAMSL CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH VALFPDFYRGLYDALRGGWGHEPTTNEWLGTIIAFGVVKWIGIWLILLWRPLRLALTPRS HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH IKAARARARAIDLFKVGTEAKTAGRTGVVLYVSLAEHRADIVADEAIASKVAPAIWGDAM HHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH AALIERIRAGQPGEGMAEAVRQVGAVLATHFPKSDGNPNELCDRLIEI HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC >Mature Secondary Structure PRKVNHVSAEDHRIVTDAVAAAERHTDGEIVTIIAARSSDYDDVALVWASVGAFLAMSL CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH VALFPDFYRGLYDALRGGWGHEPTTNEWLGTIIAFGVVKWIGIWLILLWRPLRLALTPRS HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH IKAARARARAIDLFKVGTEAKTAGRTGVVLYVSLAEHRADIVADEAIASKVAPAIWGDAM HHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH AALIERIRAGQPGEGMAEAVRQVGAVLATHFPKSDGNPNELCDRLIEI HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA