| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486447
Identifier: 103486447
GI number: 103486447
Start: 983333
End: 984034
Strand: Direct
Name: 103486447
Synonym: Sala_0957
Alternate gene names: NA
Gene position: 983333-984034 (Clockwise)
Preceding gene: 103486446
Following gene: 103486450
Centisome position: 29.4
GC content: 68.66
Gene sequence:
>702_bases ATGCAACCGATGTCACTGTTGATTACCACCTGCGTCCTGTTCGTCGGCACCCATTTGCTGATGTCGCATCCGTTGCGCGC GGGGCTGGCGAGCCGACTGGGTGAGCGGGGATTCCAGATCGTCTATTCGATCGTCGCGATCGCGACCTTCATCCTGGTGG TGCAGGCGTGGCGCGGGATGCCGCCCGAACCGCCGCTTTGGCCGGTCGGGGACGGGCTTTGGGCGCTTGCCTCGCTGATC GTGCTGTTCGCGAGCATATTGTTCGTGGGGTCGCTGGTCGGCAATCCCGCGCTGGCGGCGCCGGGCGCCGAAAAGGCTGC ACAGGCCGCGCCGCGCGGGGTGTTCGCAATCACGCGCCACCCGATGATGTGGGGCTTTGCGCTATGGGCGCTGGCGCATG TCATGGTGATGCCGACGCCGGGGCAGATTGTGCTGTCGGCGACGATCGCCTTCCTCGCGCTCGCCGGATCGGCGGGGCAG GATGTCAAGAAGGCGCGACTGATGGGCGACGCCTGGCGCGGCTGGGCGGCGCGGACGAGCTTCGTTCCCTTTGCGCGGCA GGTCGGCGGCGCGGCGCCATGGGCCGACGCAATGCCGCGCGCGCACGCGCTGCTCGGCGGGATCATCCTCTGGCTCGCGG CGAGCTGGGCGCATGGCGCGCTGGGCTATATGGTTGCAGGGGTCTGGCGCTGGGTGGGATAA
Upstream 100 bases:
>100_bases TCTTTGCTGTCCAAGATGTTGTCACTGCAAACATCGCGACTCGCCTGAGGGTCATCGCGCTGGGAAGCGAACGGATTGTC GATCAATAAGGGTGTCCGCC
Downstream 100 bases:
>100_bases CGGCCCTGCCGCCGAAGTCTTACAGCCGCACCATCCGCATCCCCTGTTCGCCATAGCGCGGGCCGCTGGTTCCGCCCTTC GGCGCTGCGGAGTCGATCGC
Product: NnrU
Products: NA
Alternate protein names: NnrUfamily Protein; MFS Superfamily Permease; NnrU Protein
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGMPPEPPLWPVGDGLWALASLI VLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRHPMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQ DVKKARLMGDAWRGWAARTSFVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG
Sequences:
>Translated_233_residues MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGMPPEPPLWPVGDGLWALASLI VLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRHPMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQ DVKKARLMGDAWRGWAARTSFVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG >Mature_233_residues MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGMPPEPPLWPVGDGLWALASLI VLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRHPMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQ DVKKARLMGDAWRGWAARTSFVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG
Specific function: Unknown
COG id: COG4094
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24708; Mature: 24708
Theoretical pI: Translated: 11.64; Mature: 11.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGM CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PPEPPLWPVGDGLWALASLIVLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEHHHCC PMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQDVKKARLMGDAWRGWAARTS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQPMSLLITTCVLFVGTHLLMSHPLRAGLASRLGERGFQIVYSIVAIATFILVVQAWRGM CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PPEPPLWPVGDGLWALASLIVLFASILFVGSLVGNPALAAPGAEKAAQAAPRGVFAITRH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEHHHCC PMMWGFALWALAHVMVMPTPGQIVLSATIAFLALAGSAGQDVKKARLMGDAWRGWAARTS HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH FVPFARQVGGAAPWADAMPRAHALLGGIILWLAASWAHGALGYMVAGVWRWVG HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA