Click here to switch to the map view.

The map label for this gene is algR [H]

Identifier: 103486420

GI number: 103486420

Start: 945354

End: 946085

Strand: Reverse

Name: algR [H]

Synonym: Sala_0930

Alternate gene names: 103486420

Gene position: 946085-945354 (Counterclockwise)

Preceding gene: 103486421

Following gene: 103486417

Centisome position: 28.28

GC content: 64.75

Gene sequence:

>732_bases
ATGCTTCAGACCTTGCGCACGTTGATCGTCGATGACGAACCGCTCGCGATCGAACGGCTCCAGATCCTTGCGGGGCAACA
GGACGGGATTTCGCTCGTCGGCACGGCGAGCGACGGCGCCTCGGCGCTTCGCATGGTCGATGCGCTGGCACCCGACCTGC
TGCTCTGCGACATCGCGATGCCCGACCTCAACGGGCTGGAGGTGGCGGCGGCGATCGAGCGGCTCGACAATCCGCCCGCC
ATCGTCTTCGTCACCGCTTTCGACCGCTATGCCGTCGCGGCGTTCGAGGTGGCGGCGGTCGATTATCTGCTGAAACCCGT
TTCCCCCGATCGGCTGACGCGCGCCGTGTCGCGCGTGCGCGAATGGCGCGCGGCCGAACGCCCATCGAAACAGAAAAGCA
AATGGATCACCGAGTTCTGGGTTCAGAACCGCGGCGAAATGCTGCGCATCGACGCGGCGCAGGTCGATCTGATCGAGGCC
GAGCGCGACTATATGCGCCTGCACGTCGGCGCGCGCAGCTGGCTGATCCATCAGACGATCAAATCGCTGGAAGCGCGGAT
GAACCCTGACCAGTTCATGCGCATCCACCGATCGAAGATGATCCGGCGCGACGGCATCGTCGGCCTGAAACACCATGGCG
ACGGCGCGTGGAGTGTCGACCTGGGTGAGGGCGGCGTCCATCGCATCGGGCGCACCTACCTCCACGATGTAAAGGCGATC
ATGCACGCCTGA

Upstream 100 bases:

>100_bases
TGACCCGCTACGGACCCGCAGCCGGGTGCGAATGGGGCAAATCGGACGACGGCGGCTTTGTCGTTTCGCTATGGCTGCCG
CTGGCACGGGAGGCTTGCTG

Downstream 100 bases:

>100_bases
CAAAAAGGCGGTCATGCCGCCGGAGCATGACCGCCTTTCCGAACGATCGCAAGGGACTGCGATCAGGGAGCGGCGGCGAT
GAAGAGCCGCCCGGCGTCGG

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MLQTLRTLIVDDEPLAIERLQILAGQQDGISLVGTASDGASALRMVDALAPDLLLCDIAMPDLNGLEVAAAIERLDNPPA
IVFVTAFDRYAVAAFEVAAVDYLLKPVSPDRLTRAVSRVREWRAAERPSKQKSKWITEFWVQNRGEMLRIDAAQVDLIEA
ERDYMRLHVGARSWLIHQTIKSLEARMNPDQFMRIHRSKMIRRDGIVGLKHHGDGAWSVDLGEGGVHRIGRTYLHDVKAI
MHA

Sequences:

>Translated_243_residues
MLQTLRTLIVDDEPLAIERLQILAGQQDGISLVGTASDGASALRMVDALAPDLLLCDIAMPDLNGLEVAAAIERLDNPPA
IVFVTAFDRYAVAAFEVAAVDYLLKPVSPDRLTRAVSRVREWRAAERPSKQKSKWITEFWVQNRGEMLRIDAAQVDLIEA
ERDYMRLHVGARSWLIHQTIKSLEARMNPDQFMRIHRSKMIRRDGIVGLKHHGDGAWSVDLGEGGVHRIGRTYLHDVKAI
MHA
>Mature_243_residues
MLQTLRTLIVDDEPLAIERLQILAGQQDGISLVGTASDGASALRMVDALAPDLLLCDIAMPDLNGLEVAAAIERLDNPPA
IVFVTAFDRYAVAAFEVAAVDYLLKPVSPDRLTRAVSRVREWRAAERPSKQKSKWITEFWVQNRGEMLRIDAAQVDLIEA
ERDYMRLHVGARSWLIHQTIKSLEARMNPDQFMRIHRSKMIRRDGIVGLKHHGDGAWSVDLGEGGVHRIGRTYLHDVKAI
MHA

Specific function: Positive regulator of the algD gene, which codes for a GDP-mannose dehydrogenase, a key step enzyme in the alginate biosynthesis pathway [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=238, Percent_Identity=31.0924369747899, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1788724, Length=243, Percent_Identity=25.9259259259259, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27234; Mature: 27234

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQTLRTLIVDDEPLAIERLQILAGQQDGISLVGTASDGASALRMVDALAPDLLLCDIAM
CHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECC
PDLNGLEVAAAIERLDNPPAIVFVTAFDRYAVAAFEVAAVDYLLKPVSPDRLTRAVSRVR
CCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EWRAAERPSKQKSKWITEFWVQNRGEMLRIDAAQVDLIEAERDYMRLHVGARSWLIHQTI
HHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHEEECCHHHHHHHHHH
KSLEARMNPDQFMRIHRSKMIRRDGIVGLKHHGDGAWSVDLGEGGVHRIGRTYLHDVKAI
HHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHH
MHA
HCC
>Mature Secondary Structure
MLQTLRTLIVDDEPLAIERLQILAGQQDGISLVGTASDGASALRMVDALAPDLLLCDIAM
CHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECC
PDLNGLEVAAAIERLDNPPAIVFVTAFDRYAVAAFEVAAVDYLLKPVSPDRLTRAVSRVR
CCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EWRAAERPSKQKSKWITEFWVQNRGEMLRIDAAQVDLIEAERDYMRLHVGARSWLIHQTI
HHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHEEECCHHHHHHHHHH
KSLEARMNPDQFMRIHRSKMIRRDGIVGLKHHGDGAWSVDLGEGGVHRIGRTYLHDVKAI
HHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHH
MHA
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2493441; 10984043; 2544550; 8159168 [H]