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The map label for this gene is yqgF [C]

Identifier: 103486415

GI number: 103486415

Start: 938653

End: 939111

Strand: Reverse

Name: yqgF [C]

Synonym: Sala_0925

Alternate gene names: 103486415

Gene position: 939111-938653 (Counterclockwise)

Preceding gene: 103486416

Following gene: 103486414

Centisome position: 28.07

GC content: 68.85

Gene sequence:

>459_bases
ATGATCACCACCGCCGCCCCCGACTTTGCCGCCGCGCTCCCGAACGGCGGCCGCCTCGCGGGGCTTGATGTCGGCACCAA
AACGATAGGCGTTGCGCTGTGCGATGCGGGATGGTCGTTCGCTTCGCCCGACAAGACGATCGTGCGCAAGAGATTTTCGG
CCGATCTCGACGCGCTCAAGGCACTCGTCGCCGGGCAGGCGGTGGTCGGGCTGGTCGTCGGCCTGCCGCTCAACATGGAC
GGCAGCGACAGCCCGCGCACGCAGAGTACGCGCGCCTTCGCACGCAATCTGGCGCCGCTCGGCCTGCCCGTGCTGCTGTG
GGACGAACGCTGGTCGACCGCGGCGGTCGAACGCGCGATGATCGCCGCCGACGTCAGTCGCGCCAAACGCGCGGAGCGTA
TCGACAGCGCCGCGGCGGCGTTCATATTGCAGGGTGCAATCGACGCGATGACGCGCTGA

Upstream 100 bases:

>100_bases
GGGACACCCGAACAGGTAGTGAAGGAAAAGCGCAGCTTCACCGGGCAGTATCTGGCGCCGATGTTGGAAAAATAGCGCGC
AAACGGCTAGACGGGGCCAA

Downstream 100 bases:

>100_bases
TCCGCCCAGTGGCGAAGCCATGGGGAGGTGGCAGCGCGAAGCGCTGACGGAGGGGCCACAACGCTGCCGCTGCTGCCCCT
CCACCACGCCCTGCGGGCGC

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALKALVAGQAVVGLVVGLPLNMD
GSDSPRTQSTRAFARNLAPLGLPVLLWDERWSTAAVERAMIAADVSRAKRAERIDSAAAAFILQGAIDAMTR

Sequences:

>Translated_152_residues
MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALKALVAGQAVVGLVVGLPLNMD
GSDSPRTQSTRAFARNLAPLGLPVLLWDERWSTAAVERAMIAADVSRAKRAERIDSAAAAFILQGAIDAMTR
>Mature_152_residues
MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALKALVAGQAVVGLVVGLPLNMD
GSDSPRTQSTRAFARNLAPLGLPVLLWDERWSTAAVERAMIAADVSRAKRAERIDSAAAAFILQGAIDAMTR

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=33.8345864661654, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_SPHAL (Q1GUM9)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_615976.1
- ProteinModelPortal:   Q1GUM9
- SMR:   Q1GUM9
- GeneID:   4080478
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_0925
- NMPDR:   fig|317655.9.peg.865
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- BioCyc:   SALA317655:SALA_0925-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15834; Mature: 15834

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALK
CCCCCCCCHHHHCCCCCEEEECCCCCHHHEEEEECCCCCCCCCCHHHHHHHHCCCHHHHH
ALVAGQAVVGLVVGLPLNMDGSDSPRTQSTRAFARNLAPLGLPVLLWDERWSTAAVERAM
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH
IAADVSRAKRAERIDSAAAAFILQGAIDAMTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MITTAAPDFAAALPNGGRLAGLDVGTKTIGVALCDAGWSFASPDKTIVRKRFSADLDALK
CCCCCCCCHHHHCCCCCEEEECCCCCHHHEEEEECCCCCCCCCCHHHHHHHHCCCHHHHH
ALVAGQAVVGLVVGLPLNMDGSDSPRTQSTRAFARNLAPLGLPVLLWDERWSTAAVERAM
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH
IAADVSRAKRAERIDSAAAAFILQGAIDAMTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA