| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486412
Identifier: 103486412
GI number: 103486412
Start: 935126
End: 936097
Strand: Reverse
Name: 103486412
Synonym: Sala_0922
Alternate gene names: NA
Gene position: 936097-935126 (Counterclockwise)
Preceding gene: 103486413
Following gene: 103486401
Centisome position: 27.98
GC content: 65.33
Gene sequence:
>972_bases ATGGCCCTTCCCCCCGTTTTTGACCGCCTGCGCCTGCCGGTGATCGGCTCGCCGCTGTTCATCGTGTCGGGACCCGACCT GGTGATTGCCCAGTGCAAGGCGGGGATCGTCGGGAGCTTTCCGGCGCTGAACGCGCGTCCGCAATCGCTGCTCGACGAAT GGCTGCACCGTATCACCGAGGAACTGGCCGCGTGGGACCGCGACAATCCCGACCGCCCCTCGGCGCCCTATGCGGTCAAC CAGATCGTCCACAAATCGAACGACCGGCTGGAAGCCGACATTGCGACCTGCGCCAAATGGAAGGTGCCGATTACCATCAC TTCGCTCGGCGCGCGCGAAGAGCTCAACCAGGCGGTGCATGACTGGGGCGGCATCACGCTGCACGATGTCATCGACGACC GCTTCGCGCGCAAGGCGATCGAAAAGGGCGCCGACGGGCTGATCCCCGTCGCCGCGGGCGCGGGCGGCCACGCCGGGCGG CAATCCCCCTTCGCACTGATGCAGGAAATCCGCGAATGGTTCGATGGCCCGGTCGCCCTGTCGGGCGCGATCGGCCACGG TCGCTCGATCCTCGCCGCGCAGGCCTGCGGCGCCGACCTCGCCTATATCGGCAGCGCCTTTATCGCGACTGCCGAAGCCA ATGCAGACGAAGGGTACAAGAACGGCATTGTCGAGGGGCGTGCTGCCGACATCGTCTATTCGAACCTCTTTACCGGCGTG CACGGCAATTACCTCCGCCAGTCGATCGTCGCCGCGGGCATGGACCCCGACAATCTTCCCGAAGGTGATCTGAAGACGAT GAACTTCGGTTCGGGCGGCAACACCAAGGCGAAGGCGTGGAAGGACATTTGGGGGTCAGGGCAAGGTATCGGCGCCGTTT CCGCGATACGCCCCGTCGCGGAGTTCGTCGCCGAGCTGGAAACGCAATATCTGGCAGCGCGCCGCGAGCTGGAGGCAAAG GTCCGGCTTTAG
Upstream 100 bases:
>100_bases GCAGCCGAGCGACTGGAAACAGCGCCGGTAGATCGATCCCTCTTGCGCCGCTTTCCGCTTACGTTAAGGTCAATTTCAAA TCGCAACCGGAGAGTGATTC
Downstream 100 bases:
>100_bases AGCGGCTTGCTGGACAACATCGGTGACGATGGAAATGCACCAGCCCCTCCTCGCGCCTCGCACTCGGCCAAAATCGCCTC CGTCACGGTGGATCAATATC
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: 2-Nitropropane Dioxygenase; Enoyl-(Acyl-Carrier-Protein) Reductase II; 2-Nitropropane Dioxygenase Family Protein; Dioxygenase; Oxidoreductase 2-Nitropropane Dioxygenase Family; Oxidoreductase; 2-Nitropropane Dioxygenase Npd; 2-Nitropropane Dioxygenase Family; Dioxygenases Related 2-Nitropropane Dioxygenase; 2-Nitropropane Dioxygenase Family Oxidoreductase; 2-Nitropropane Dioxygenase-Like Dioxygenase; Dioxygenase Protein; Transmembrane Protein; 2-Nitropropane Dioxygenase-Like Protein; Trans-2-Enoyl-ACP Reductase II; 2-Nitropropane Dioxygenase Protein; Oxidoreductase 2-Nitropropane Dioxygenase Family Protein; Dioxygenase Oxidoreductase -Nitropropane Dioxygenase Npd
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MALPPVFDRLRLPVIGSPLFIVSGPDLVIAQCKAGIVGSFPALNARPQSLLDEWLHRITEELAAWDRDNPDRPSAPYAVN QIVHKSNDRLEADIATCAKWKVPITITSLGAREELNQAVHDWGGITLHDVIDDRFARKAIEKGADGLIPVAAGAGGHAGR QSPFALMQEIREWFDGPVALSGAIGHGRSILAAQACGADLAYIGSAFIATAEANADEGYKNGIVEGRAADIVYSNLFTGV HGNYLRQSIVAAGMDPDNLPEGDLKTMNFGSGGNTKAKAWKDIWGSGQGIGAVSAIRPVAEFVAELETQYLAARRELEAK VRL
Sequences:
>Translated_323_residues MALPPVFDRLRLPVIGSPLFIVSGPDLVIAQCKAGIVGSFPALNARPQSLLDEWLHRITEELAAWDRDNPDRPSAPYAVN QIVHKSNDRLEADIATCAKWKVPITITSLGAREELNQAVHDWGGITLHDVIDDRFARKAIEKGADGLIPVAAGAGGHAGR QSPFALMQEIREWFDGPVALSGAIGHGRSILAAQACGADLAYIGSAFIATAEANADEGYKNGIVEGRAADIVYSNLFTGV HGNYLRQSIVAAGMDPDNLPEGDLKTMNFGSGGNTKAKAWKDIWGSGQGIGAVSAIRPVAEFVAELETQYLAARRELEAK VRL >Mature_322_residues ALPPVFDRLRLPVIGSPLFIVSGPDLVIAQCKAGIVGSFPALNARPQSLLDEWLHRITEELAAWDRDNPDRPSAPYAVNQ IVHKSNDRLEADIATCAKWKVPITITSLGAREELNQAVHDWGGITLHDVIDDRFARKAIEKGADGLIPVAAGAGGHAGRQ SPFALMQEIREWFDGPVALSGAIGHGRSILAAQACGADLAYIGSAFIATAEANADEGYKNGIVEGRAADIVYSNLFTGVH GNYLRQSIVAAGMDPDNLPEGDLKTMNFGSGGNTKAKAWKDIWGSGQGIGAVSAIRPVAEFVAELETQYLAARRELEAKV RL
Specific function: Unknown
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34496; Mature: 34365
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPPVFDRLRLPVIGSPLFIVSGPDLVIAQCKAGIVGSFPALNARPQSLLDEWLHRITE CCCCCCHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH ELAAWDRDNPDRPSAPYAVNQIVHKSNDRLEADIATCAKWKVPITITSLGAREELNQAVH HHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH DWGGITLHDVIDDRFARKAIEKGADGLIPVAAGAGGHAGRQSPFALMQEIREWFDGPVAL HCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEE SGAIGHGRSILAAQACGADLAYIGSAFIATAEANADEGYKNGIVEGRAADIVYSNLFTGV ECCCCCCCHHHHHHHCCCHHHHHHHHHHEECCCCCCCCHHCCCCCCCHHHHHHHHHHHCC HGNYLRQSIVAAGMDPDNLPEGDLKTMNFGSGGNTKAKAWKDIWGSGQGIGAVSAIRPVA CHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH EFVAELETQYLAARRELEAKVRL HHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ALPPVFDRLRLPVIGSPLFIVSGPDLVIAQCKAGIVGSFPALNARPQSLLDEWLHRITE CCCCCHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH ELAAWDRDNPDRPSAPYAVNQIVHKSNDRLEADIATCAKWKVPITITSLGAREELNQAVH HHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH DWGGITLHDVIDDRFARKAIEKGADGLIPVAAGAGGHAGRQSPFALMQEIREWFDGPVAL HCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEE SGAIGHGRSILAAQACGADLAYIGSAFIATAEANADEGYKNGIVEGRAADIVYSNLFTGV ECCCCCCCHHHHHHHCCCHHHHHHHHHHEECCCCCCCCHHCCCCCCCHHHHHHHHHHHCC HGNYLRQSIVAAGMDPDNLPEGDLKTMNFGSGGNTKAKAWKDIWGSGQGIGAVSAIRPVA CHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH EFVAELETQYLAARRELEAKVRL HHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA