Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486408

Identifier: 103486408

GI number: 103486408

Start: 930297

End: 931808

Strand: Direct

Name: 103486408

Synonym: Sala_0918

Alternate gene names: NA

Gene position: 930297-931808 (Clockwise)

Preceding gene: 103486407

Following gene: 103486409

Centisome position: 27.81

GC content: 61.04

Gene sequence:

>1512_bases
ATGACGGGCATGGACAGCAGCACCGCCAGGCTGAAAATCGTCATCGCCGGCGGCGGCACCGCCGGCTGGATGGCGGCGGC
GGCCTTGTCCGGCACCTTGGGCGCGGCAATCGATCTGACCCTGATCGAATCCGATGCCATTGGCACGATCGGCGTTGGAG
AAAGCACGATCCCGCCGATCGTGCTGTTCAATCGATTGATGGGGATCAATGAAGCCGCATTCATGCGCGCGACCCAGGCG
ACGTTCAAGCTGGGGATCCAGTTTGAAAACTGGAAGCATGTCGGCGAAAGCTATTTCCATTCTTTTGGCACCACGGGAAA
GGATCACTGGTCGGCGGGGTTCCAGCATTTCTGGCTTCACGGCCTGACCTGCGGGCACAGCCGGAGTTATGACGATTACT
GCCTGGAGCTGAAGGCTGCGCACGAGGGCAAGTTCGCGCATCTGCCCGACGATCGCATGAATTATGCCTATCAACTTGAT
TCGTCGCTTTACGCCGCCTTTTTGCGCGAGCGTGCGGAAGGCGACGGCACGAGGCGAATCGAGGGGCGGATCGCCGCCGT
CGAACTCGACGGTGCAAGCGGCAATATCGCGGCGCTGATGCTCGACGGCGAGCGGCGGATCGAAGGCGATCTTTTCATCG
ATTGTACCGGTTTTCGTGCGCTGCTGATCGAAGGCGCCCTGCACGCGGGGTTCGACGACTGGACACACTATCTTCCCTGC
GATTCCGCGATTGCCGTGCAGACTGCAAGCGTCGCCCCGCCCGTGCCCTATACGCGGGCGATCGCGCACGATGCCGGATG
GCAATGGCGCATTCCGTTGCAGCACCGCCAGGGAAACGGGATCGTCTATTGCAGTCGTTACCTTGCCAAAGACGATGCGC
TCGACCGGTTGCTCGGTTCCATCGAGGGTGATGTGCTGACCGAGCCGAACTTCATCGGCTATCGCACGGGAGCGCGGCGC
AAACAGTGGTACCGAAACTGCGTGGCAGTCGGTCTGTCGGGCGGGTTCATGGAGCCGCTTGAATCGACCTCGATCCACCT
CATCCAGCGGGCCGTGCTGCGTCTCATCCGTATGCTGCCTTCGGGGCCGGTCAGCGAGCGCGACATCGCCGAGTTCAACG
ATCAGCAATTTGCCGACATGGAACAGATCCGCGACTTTCTCATTCTCCATTACAAGGTGACCGAGCGGCGTGATTCACCC
TTTTGGCGGCAGTGTGCGGCGATGCCGATCCCGGCGAGCCTTGAACAGAAAATCGAACTGTTTCGCGAGACGGGCCGGGT
GTTCCGCAGAAATGAGGAGCTTTTTGTCGAAAACAGCTGGGTGCAGGTGATGATGGGCCAGGGCATCATGCCACAGCGCT
ATCATCCGATCGCGGCAAAGCTCCGTCCCGACGAACTCGAGGCATTTCTGTCGATGCTGCGCGACGGCGTCGAGCGAACG
GTTGCAAGCCTGCCTGCGCACGGGGCCTATATCGCCCGATATTGCGCGGTCGGCGGGCGGAACGACGCATGA

Upstream 100 bases:

>100_bases
TGACCGATCACCTGCCTGTCGACGCGCGCGGGATACTTGCGCCGCTTACGCCTGAAACTGCGGGACAAATCCGCGCGCGG
CTCCTGCGGAGCCTGTCGCG

Downstream 100 bases:

>100_bases
CGCCCGCGTTCGTGATCGCGCTCGTTCTTGAGGGCATGCACACGCCTGCCGCGGTGCCGGAACAGGACAATTGGACGCTG
GTCTGGTCGGACGAGTTCGA

Product: tryptophan halogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MTGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPIVLFNRLMGINEAAFMRATQA
TFKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLHGLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLD
SSLYAAFLRERAEGDGTRRIEGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPC
DSAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGSIEGDVLTEPNFIGYRTGARR
KQWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLPSGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSP
FWRQCAAMPIPASLEQKIELFRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERT
VASLPAHGAYIARYCAVGGRNDA

Sequences:

>Translated_503_residues
MTGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPIVLFNRLMGINEAAFMRATQA
TFKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLHGLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLD
SSLYAAFLRERAEGDGTRRIEGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPC
DSAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGSIEGDVLTEPNFIGYRTGARR
KQWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLPSGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSP
FWRQCAAMPIPASLEQKIELFRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERT
VASLPAHGAYIARYCAVGGRNDA
>Mature_502_residues
TGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPIVLFNRLMGINEAAFMRATQAT
FKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLHGLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLDS
SLYAAFLRERAEGDGTRRIEGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPCD
SAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGSIEGDVLTEPNFIGYRTGARRK
QWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLPSGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSPF
WRQCAAMPIPASLEQKIELFRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERTV
ASLPAHGAYIARYCAVGGRNDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006905 [H]

Pfam domain/function: PF04820 Trp_halogenase [H]

EC number: NA

Molecular weight: Translated: 55956; Mature: 55825

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPI
CCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCCCCCCHH
VLFNRLMGINEAAFMRATQATFKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLH
HHHHHHHCCCHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHH
GLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLDSSLYAAFLRERAEGDGTRRI
CEECCCCCCCCCCEEEEEECCCCCCCCCCCHHCCEEEEECHHHHHHHHHHHHCCCCCEEE
EGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPC
CCEEEEEEECCCCCCEEEEEECCCCEECCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCC
DSAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGS
CCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHCHHHHHHHHHH
IEGDVLTEPNFIGYRTGARRKQWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLP
CCCCEECCCCCEEECCCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
SGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSPFWRQCAAMPIPASLEQKIEL
CCCCCCCHHHHCCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHH
FRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERT
HHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH
VASLPAHGAYIARYCAVGGRNDA
HHHCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TGMDSSTARLKIVIAGGGTAGWMAAAALSGTLGAAIDLTLIESDAIGTIGVGESTIPPI
CCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCCCCCCHH
VLFNRLMGINEAAFMRATQATFKLGIQFENWKHVGESYFHSFGTTGKDHWSAGFQHFWLH
HHHHHHHCCCHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHH
GLTCGHSRSYDDYCLELKAAHEGKFAHLPDDRMNYAYQLDSSLYAAFLRERAEGDGTRRI
CEECCCCCCCCCCEEEEEECCCCCCCCCCCHHCCEEEEECHHHHHHHHHHHHCCCCCEEE
EGRIAAVELDGASGNIAALMLDGERRIEGDLFIDCTGFRALLIEGALHAGFDDWTHYLPC
CCEEEEEEECCCCCCEEEEEECCCCEECCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCC
DSAIAVQTASVAPPVPYTRAIAHDAGWQWRIPLQHRQGNGIVYCSRYLAKDDALDRLLGS
CCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHCHHHHHHHHHH
IEGDVLTEPNFIGYRTGARRKQWYRNCVAVGLSGGFMEPLESTSIHLIQRAVLRLIRMLP
CCCCEECCCCCEEECCCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
SGPVSERDIAEFNDQQFADMEQIRDFLILHYKVTERRDSPFWRQCAAMPIPASLEQKIEL
CCCCCCCHHHHCCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCCCCHHHHHHHHH
FRETGRVFRRNEELFVENSWVQVMMGQGIMPQRYHPIAAKLRPDELEAFLSMLRDGVERT
HHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH
VASLPAHGAYIARYCAVGGRNDA
HHHCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]