| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486351
Identifier: 103486351
GI number: 103486351
Start: 869236
End: 870300
Strand: Reverse
Name: 103486351
Synonym: Sala_0861
Alternate gene names: NA
Gene position: 870300-869236 (Counterclockwise)
Preceding gene: 103486352
Following gene: 103486350
Centisome position: 26.02
GC content: 62.16
Gene sequence:
>1065_bases ATGAGCGAATTGCGCGCCCTGGCCGATTCCGACCGGCTTTCCGCATGGCTCGACGTGCATGTTCCCGCGCTGGGGCACGG GCCGCTGGCGATCGGAAAAATCCATGGTGGCACCTCGAACGTCATTCTGTCGCTGGATCGCGGTGGCCGGACGCTGGTCC TTCGCCGTCCGCCGATCGTCCCGCCGCCGGGCAGCGCGAAGAGCATCTTGCGCGAAGCGCGGGTGCTGACCGCGCTGAAC GGCACCGATGTGCCGCATCCCGTCTGCCATGCAAGCTGCGCCGACCCGGACGTCATCGGCGCGCCCTTTTATGTCATGGA CCGTGTCGACGGATGGTCTGGCGCCCTTTGCGACGGGCGCATTCATGACCGCCCGCCGTTCGACAAGCCTCCCCATGCCG GCGAGATCCCGTTTGCGATGGTCGACGGGCTGATCGCGCTCGCCAATGTCGATTACCGCGCCGTCGGTCTCGACGATTTC GGGCGGCCCGATAATTTTCTGGAGCGACAGGTCGATCGCTGGGAAAGTCAGATCATAAGCTATCGCCAACTCTATGATTT CGAATGGCGTGAGCTGCCCGGCTATGCGCTCGCTCGCGACTGGCTTCGCGCGAACGCGCCGGACGATTTCCGGCCCGGTA TTATCCACGGCGATGTCGGGACGCCCAATGCATTGTTTGCCTTTGACCCGCCATGCCGCCTTGCCGCGCTGATCGACTGG GAATTGTCAACCATAGCCGACCCGCTGCTCGATCTGGCATGGTTCTGCAACGGCATCTGCGACGATCGATTTCCGGGCCA TGTGCCTGAAAAGGCGCTGTACAATGTGGACCACTGGCCATCGCGGCAGGAATTGATGGCGCATTATGCCGTCGGCACCG GGCGCGACATGGCGAGTTTCGATTATTATCTGGTGCTGGCGATGTTCAAGGGTGGCTGTATCCTGGAATATAAGGTCGCG CAGGCCGCCAAGGGCATTCTAAGCGCCGAAACAGGCCACTTCTTCGACCGGCTTGTGCGCGGCAATTTTGCCGAAGCCGA AAAGCTGATCCGACTGGTCGGCTAA
Upstream 100 bases:
>100_bases ATATACTCGCGCGGATCGACGGGGAAATGTTCGCCGACGCGGCCGACCGGTTGCAAGAGATACGCCAGGGGATCGAAACC TATTTGCGCGCGCGCGACCG
Downstream 100 bases:
>100_bases CCCTGTCCCGCCGGAATAGCAGGAGCAGACATGATCAACTTTCGCATCGAACCGGACTTGCAGGCGAGGCTGGACTGGAT GGCAGCGTTTGTCCGCCGCG
Product: aminoglycoside phosphotransferase
Products: NA
Alternate protein names: Phosphotransferase; Phosphotransferase Family Protein; Phosphotransferase Family Protein; Acyl-CoA Dehydrogenase; Phosphotransferase Family; Acyl-Co A Dehydrogenase; Acyl-CoA Dehydrogenase FadE; Tyrosine Protein Kinase/Aminoglycoside Phosphotransferase; Acyl-Coa Dehydrogenase Fade; Acyl-CoA Dehydrogenase Family Member; Acyl-CoA Dehydrogenase Domain-Containing Protein
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MSELRALADSDRLSAWLDVHVPALGHGPLAIGKIHGGTSNVILSLDRGGRTLVLRRPPIVPPPGSAKSILREARVLTALN GTDVPHPVCHASCADPDVIGAPFYVMDRVDGWSGALCDGRIHDRPPFDKPPHAGEIPFAMVDGLIALANVDYRAVGLDDF GRPDNFLERQVDRWESQIISYRQLYDFEWRELPGYALARDWLRANAPDDFRPGIIHGDVGTPNALFAFDPPCRLAALIDW ELSTIADPLLDLAWFCNGICDDRFPGHVPEKALYNVDHWPSRQELMAHYAVGTGRDMASFDYYLVLAMFKGGCILEYKVA QAAKGILSAETGHFFDRLVRGNFAEAEKLIRLVG
Sequences:
>Translated_354_residues MSELRALADSDRLSAWLDVHVPALGHGPLAIGKIHGGTSNVILSLDRGGRTLVLRRPPIVPPPGSAKSILREARVLTALN GTDVPHPVCHASCADPDVIGAPFYVMDRVDGWSGALCDGRIHDRPPFDKPPHAGEIPFAMVDGLIALANVDYRAVGLDDF GRPDNFLERQVDRWESQIISYRQLYDFEWRELPGYALARDWLRANAPDDFRPGIIHGDVGTPNALFAFDPPCRLAALIDW ELSTIADPLLDLAWFCNGICDDRFPGHVPEKALYNVDHWPSRQELMAHYAVGTGRDMASFDYYLVLAMFKGGCILEYKVA QAAKGILSAETGHFFDRLVRGNFAEAEKLIRLVG >Mature_353_residues SELRALADSDRLSAWLDVHVPALGHGPLAIGKIHGGTSNVILSLDRGGRTLVLRRPPIVPPPGSAKSILREARVLTALNG TDVPHPVCHASCADPDVIGAPFYVMDRVDGWSGALCDGRIHDRPPFDKPPHAGEIPFAMVDGLIALANVDYRAVGLDDFG RPDNFLERQVDRWESQIISYRQLYDFEWRELPGYALARDWLRANAPDDFRPGIIHGDVGTPNALFAFDPPCRLAALIDWE LSTIADPLLDLAWFCNGICDDRFPGHVPEKALYNVDHWPSRQELMAHYAVGTGRDMASFDYYLVLAMFKGGCILEYKVAQ AAKGILSAETGHFFDRLVRGNFAEAEKLIRLVG
Specific function: Unknown
COG id: COG3173
COG function: function code R; Predicted aminoglycoside phosphotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI48976061, Length=339, Percent_Identity=30.9734513274336, Blast_Score=128, Evalue=9e-30, Organism=Homo sapiens, GI211971008, Length=339, Percent_Identity=30.9734513274336, Blast_Score=128, Evalue=9e-30, Organism=Homo sapiens, GI38505218, Length=346, Percent_Identity=30.635838150289, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17562446, Length=324, Percent_Identity=28.3950617283951, Blast_Score=101, Evalue=7e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39102; Mature: 38971
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELRALADSDRLSAWLDVHVPALGHGPLAIGKIHGGTSNVILSLDRGGRTLVLRRPPIV CCHHHHHHCCCHHEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCC PPPGSAKSILREARVLTALNGTDVPHPVCHASCADPDVIGAPFYVMDRVDGWSGALCDGR CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCEECCC IHDRPPFDKPPHAGEIPFAMVDGLIALANVDYRAVGLDDFGRPDNFLERQVDRWESQIIS CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH YRQLYDFEWRELPGYALARDWLRANAPDDFRPGIIHGDVGTPNALFAFDPPCRLAALIDW HHHHHCCHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCCEEEEECC ELSTIADPLLDLAWFCNGICDDRFPGHVPEKALYNVDHWPSRQELMAHYAVGTGRDMASF CHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHH DYYLVLAMFKGGCILEYKVAQAAKGILSAETGHFFDRLVRGNFAEAEKLIRLVG HHHHHHHHHCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure SELRALADSDRLSAWLDVHVPALGHGPLAIGKIHGGTSNVILSLDRGGRTLVLRRPPIV CHHHHHHCCCHHEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCC PPPGSAKSILREARVLTALNGTDVPHPVCHASCADPDVIGAPFYVMDRVDGWSGALCDGR CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCEECCC IHDRPPFDKPPHAGEIPFAMVDGLIALANVDYRAVGLDDFGRPDNFLERQVDRWESQIIS CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH YRQLYDFEWRELPGYALARDWLRANAPDDFRPGIIHGDVGTPNALFAFDPPCRLAALIDW HHHHHCCHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCCEEEEECC ELSTIADPLLDLAWFCNGICDDRFPGHVPEKALYNVDHWPSRQELMAHYAVGTGRDMASF CHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHH DYYLVLAMFKGGCILEYKVAQAAKGILSAETGHFFDRLVRGNFAEAEKLIRLVG HHHHHHHHHCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA