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The map label for this gene is yjfH [C]

Identifier: 103486336

GI number: 103486336

Start: 853625

End: 854443

Strand: Reverse

Name: yjfH [C]

Synonym: Sala_0846

Alternate gene names: 103486336

Gene position: 854443-853625 (Counterclockwise)

Preceding gene: 103486338

Following gene: 103486334

Centisome position: 25.54

GC content: 68.13

Gene sequence:

>819_bases
ATGGCGAAACGAGGCTTGCCTGTCAATGGCAGTCATGGGAAAGGCGCGGCCATGAGACAATTTTCCCGTCACCGCCGCCC
GTCAGGCGGAAATCAGCGCGGACAGACCGTGCGCTTCTGGGGCCGCCATGCCGTCCTCGCCGCGCTCGCCAACCCTGACC
GCGCGGTCAGGCGCATCTGGGGCACGCGCGAGGCGCTCGGCCAGCTCGACCTGCCGCCGGTGATCCCGATCAGCTATGCC
GATGTCGCCGATCTGGCGCGCCTGGTCGCGCGCGACGCGCCGCATCAGGGTCTGGTGATCGAGGTCGACCCGCTCGACGG
CGTGCATCTCGGCGACCTTTTGCAGGAAGAGGTCGACGCCGAAAGCAGGCGCCCGCTCGTCATCCTCGATCAGGTCACCG
ACCCGCACAATATCGGCGCGGTGCTGCGCTCGGCGGCGGCGTTCGACGCCGCCGCGATCGTCACGCAGGACCGGCACAGC
CCGCCCGAAAGCGGCGTCATCGCGCGCTCGGCGTCGGGCGCGCTCGAAACCGTGCCGTGGGTGCGCGTCGTCAACCTGTC
GCGCGCGCTGGAGGAAATCGCCGAGGCGCAATATTGGCGCATCGGGCTGATGGGCGATACCGAAACGACGCTCGGCGAAA
CGCTCGACGGCAGCAAGGTCGCACTGGTGCTCGGCTCCGAAGGCGACGGGATGCGGCACAATGTGATGGAGCATTGCGAC
GTGCTGGCGCGGCTCCCCATCTCGCCACGGATGGAAAGCCTCAACATCTCGAACGCCGCGGCGATCGCGCTCTACGCGGT
GGCGACGGCGAGTAAATAA

Upstream 100 bases:

>100_bases
TGGATTCGAACCAGCGTACGGAAACCCGGGCAGATTTACAGTCTGCTGCCTTTAACCACTCGGCCACCTGTCCATGGGGT
CCGCGTTGGGAAGTGGCCCA

Downstream 100 bases:

>100_bases
CCGTCGCCCCCCGAAGGCGGGGCGACGTATAGGTCAATCTTCCGCCGCGATGCGCACCTTCAGCCCGTCGAGCGCATCGC
TGAACGGGATCTGGCACGAC

Product: RNA methyltransferase TrmH, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MAKRGLPVNGSHGKGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIWGTREALGQLDLPPVIPISYA
DVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDAESRRPLVILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHS
PPESGVIARSASGALETVPWVRVVNLSRALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCD
VLARLPISPRMESLNISNAAAIALYAVATASK

Sequences:

>Translated_272_residues
MAKRGLPVNGSHGKGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIWGTREALGQLDLPPVIPISYA
DVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDAESRRPLVILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHS
PPESGVIARSASGALETVPWVRVVNLSRALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCD
VLARLPISPRMESLNISNAAAIALYAVATASK
>Mature_271_residues
AKRGLPVNGSHGKGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIWGTREALGQLDLPPVIPISYAD
VADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDAESRRPLVILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSP
PESGVIARSASGALETVPWVRVVNLSRALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCDV
LARLPISPRMESLNISNAAAIALYAVATASK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=199, Percent_Identity=29.6482412060301, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1790623, Length=174, Percent_Identity=39.0804597701149, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788935, Length=240, Percent_Identity=24.5833333333333, Blast_Score=61, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324775, Length=298, Percent_Identity=25.1677852348993, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29204; Mature: 29072

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRGLPVNGSHGKGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIW
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHEEHHHHCCHHHHHHHHH
GTREALGQLDLPPVIPISYADVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDA
CCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCC
ESRRPLVILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGALETVPW
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEECCCCCCHHCCH
VRVVNLSRALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCD
HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
VLARLPISPRMESLNISNAAAIALYAVATASK
HHHCCCCCCCHHHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKRGLPVNGSHGKGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIW
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHEEHHHHCCHHHHHHHHH
GTREALGQLDLPPVIPISYADVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDA
CCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCC
ESRRPLVILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGALETVPW
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEECCCCCCHHCCH
VRVVNLSRALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCD
HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
VLARLPISPRMESLNISNAAAIALYAVATASK
HHHCCCCCCCHHHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]