| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486301
Identifier: 103486301
GI number: 103486301
Start: 814753
End: 815634
Strand: Direct
Name: 103486301
Synonym: Sala_0809
Alternate gene names: NA
Gene position: 814753-815634 (Clockwise)
Preceding gene: 103486296
Following gene: 103486302
Centisome position: 24.36
GC content: 71.54
Gene sequence:
>882_bases ATGCGCCTCCCCCACGCGGCCACCATCGCCGGCGTCCTGATGCTAGCTCTTGGAATCCCCGGTGTTTCGGCGATGCAGAC GAACGAACCGGCGAGCAGCGCCAGCCCCTACAGCTATGCCGACATCGCCGACCTGGCCACCGCGGCGCCGATCGTGCTGC ATGCGCGCATCCACCGCGCCGCAGCGCTCAAGCCCGATCGTGCGCCCGGCGTCGCGCCCGCGCACACGCGATTCTATATC GAGGCCGATGTCGTGAGCCTGATTCGCGGGAGCGGTCCGCTCGCGGCGCGAATCTCCTATCTCGTCGATCTGCCGAACGA CGCGCGCGGCAAACCCGCGAAGCTCAAGCGGAAGCAGCCGGTCCTGCTCTTTGCCCGCCCCGTCGCCGGCACCGCCGCCG GAACGAGCGACACGGGCAGCATCCAGCTGATCGCGCCCGATGCGCAGCTGCCGTGGGACGCGGCGACCGAGGCGCGGCTG CGCGCGATCCTGACCGAACTCGTCAAACCCGGCGCGCCGCCCGCGATCACCGGTATCGCCAACGGCTTCCACGTCCCCGG CACGCTGCCGGGCGAGGGCGAGACGCAGCTATTCCTGAACACCGCCACGGGAGAACCCGTATCGCTGACCATCCTCACCT CCGCCGACGGTTCGCGGCGCTGGGCGGCGGCGTTCGGCGAAATCGTCGATGGGTCGGCGGCGGTGCCGGCGCGCGAAACG CTCGCCTGGTATCGCCTGGCCTGCGGCCTGCCGCGTCAGTTGCCGCTGGACCGGCTGGCGGGAACCGCGCCCGCGGACCG GCGCAAGGCGGCGGCGGATTATGCCGTCGTCCTCGGCGCGCTCGGCGAATGCGCGCGAACGCGCAAGCCGCCCGAGGGAT AA
Upstream 100 bases:
>100_bases AACCCTTTATCAGCGGTTAATGTGCCCCGTCCCATGATGGGGTTTCGGGCACCGATACCGGTGTCACCGATGATGAAACA TGATGGAAAGAGGATCGACC
Downstream 100 bases:
>100_bases AGGTCGGCTTCGGCGCGCAAAAGGCGCAGCGGGCTTGCCTCGGGCGCAAAAGCCGATAGGGCGGCGGCGACCAGCGGGGG CCGACCCCGCGCGCCTTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 293; Mature: 293
Protein sequence:
>293_residues MRLPHAATIAGVLMLALGIPGVSAMQTNEPASSASPYSYADIADLATAAPIVLHARIHRAAALKPDRAPGVAPAHTRFYI EADVVSLIRGSGPLAARISYLVDLPNDARGKPAKLKRKQPVLLFARPVAGTAAGTSDTGSIQLIAPDAQLPWDAATEARL RAILTELVKPGAPPAITGIANGFHVPGTLPGEGETQLFLNTATGEPVSLTILTSADGSRRWAAAFGEIVDGSAAVPARET LAWYRLACGLPRQLPLDRLAGTAPADRRKAAADYAVVLGALGECARTRKPPEG
Sequences:
>Translated_293_residues MRLPHAATIAGVLMLALGIPGVSAMQTNEPASSASPYSYADIADLATAAPIVLHARIHRAAALKPDRAPGVAPAHTRFYI EADVVSLIRGSGPLAARISYLVDLPNDARGKPAKLKRKQPVLLFARPVAGTAAGTSDTGSIQLIAPDAQLPWDAATEARL RAILTELVKPGAPPAITGIANGFHVPGTLPGEGETQLFLNTATGEPVSLTILTSADGSRRWAAAFGEIVDGSAAVPARET LAWYRLACGLPRQLPLDRLAGTAPADRRKAAADYAVVLGALGECARTRKPPEG >Mature_293_residues MRLPHAATIAGVLMLALGIPGVSAMQTNEPASSASPYSYADIADLATAAPIVLHARIHRAAALKPDRAPGVAPAHTRFYI EADVVSLIRGSGPLAARISYLVDLPNDARGKPAKLKRKQPVLLFARPVAGTAAGTSDTGSIQLIAPDAQLPWDAATEARL RAILTELVKPGAPPAITGIANGFHVPGTLPGEGETQLFLNTATGEPVSLTILTSADGSRRWAAAFGEIVDGSAAVPARET LAWYRLACGLPRQLPLDRLAGTAPADRRKAAADYAVVLGALGECARTRKPPEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30369; Mature: 30369
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPHAATIAGVLMLALGIPGVSAMQTNEPASSASPYSYADIADLATAAPIVLHARIHRA CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AALKPDRAPGVAPAHTRFYIEADVVSLIRGSGPLAARISYLVDLPNDARGKPAKLKRKQP HCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCHHEEEEHEEECCCCCCCCCHHCCCCCC VLLFARPVAGTAAGTSDTGSIQLIAPDAQLPWDAATEARLRAILTELVKPGAPPAITGIA EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCC NGFHVPGTLPGEGETQLFLNTATGEPVSLTILTSADGSRRWAAAFGEIVDGSAAVPARET CCEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHH LAWYRLACGLPRQLPLDRLAGTAPADRRKAAADYAVVLGALGECARTRKPPEG HHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRLPHAATIAGVLMLALGIPGVSAMQTNEPASSASPYSYADIADLATAAPIVLHARIHRA CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AALKPDRAPGVAPAHTRFYIEADVVSLIRGSGPLAARISYLVDLPNDARGKPAKLKRKQP HCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCHHEEEEHEEECCCCCCCCCHHCCCCCC VLLFARPVAGTAAGTSDTGSIQLIAPDAQLPWDAATEARLRAILTELVKPGAPPAITGIA EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCC NGFHVPGTLPGEGETQLFLNTATGEPVSLTILTSADGSRRWAAAFGEIVDGSAAVPARET CCEECCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHH LAWYRLACGLPRQLPLDRLAGTAPADRRKAAADYAVVLGALGECARTRKPPEG HHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA