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The map label for this gene is exbD1 [H]

Identifier: 103486298

GI number: 103486298

Start: 812315

End: 812836

Strand: Reverse

Name: exbD1 [H]

Synonym: Sala_0806

Alternate gene names: 103486298

Gene position: 812836-812315 (Counterclockwise)

Preceding gene: 103486299

Following gene: 103486297

Centisome position: 24.3

GC content: 60.34

Gene sequence:

>522_bases
ATGGCGATGAGTGTAGGCGATAAGGGCGGCGAAGACGCCCCGATGTCCGAAATCAACACGACCCCGCTCGTGGACATCAT
GCTCGTGCTTCTCATCATCTTCCTCATCACGGTTCCCGTGGTGTTGGAGACGGTGGAACTCGAACTGCCCGACGTGGTCT
TTGAACCGACGACGACGAAGCCTGAAAATGTGCTGCTGTCGATCCGGTCGGCCGACACCGACGGCGATGGCCTGCCCAAT
CCCGAAAGCACGGCATGCGAAGTTTACTGGGGCCAGACCCCCGTCGATTCGCGGCAGTTGCTCGAACGCGGACAGGCGAA
GCTGGAAAAGCTGCTCGAGGACATCGGCGGGCCGCAGAACATCACCGAAGAAAACTTCCCCGAAGTGCATATCCGCGGCG
ACGTCAACACGCCGTACCAGTGCATCGGCGGCGTGATCTACACGATGCAATATGCCGGCTTCCAGAAGATCGGGTTCATT
TCGGAACCGGCTCCTGGCTCGGGCACGGTGGGCCGCCTCTAA

Upstream 100 bases:

>100_bases
GGCTCCTGGATCCCCGCCCGCCCCGTGGGCGGGCGGGGTCCGCTGGACAGTATATATCCGCTGTCCATGACAGATAATTT
TGTGACAGGATGCTAATCCT

Downstream 100 bases:

>100_bases
GGCGGTCCGCCCAGATATGAAGGAATAACCCAATGTCCATGTCAGTTGGTGAACGGGACGACAATGAACCGATGATGGAC
ATGAACACGACGCCGCTTAT

Product: biopolymer transport ExbD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MAMSVGDKGGEDAPMSEINTTPLVDIMLVLLIIFLITVPVVLETVELELPDVVFEPTTTKPENVLLSIRSADTDGDGLPN
PESTACEVYWGQTPVDSRQLLERGQAKLEKLLEDIGGPQNITEENFPEVHIRGDVNTPYQCIGGVIYTMQYAGFQKIGFI
SEPAPGSGTVGRL

Sequences:

>Translated_173_residues
MAMSVGDKGGEDAPMSEINTTPLVDIMLVLLIIFLITVPVVLETVELELPDVVFEPTTTKPENVLLSIRSADTDGDGLPN
PESTACEVYWGQTPVDSRQLLERGQAKLEKLLEDIGGPQNITEENFPEVHIRGDVNTPYQCIGGVIYTMQYAGFQKIGFI
SEPAPGSGTVGRL
>Mature_172_residues
AMSVGDKGGEDAPMSEINTTPLVDIMLVLLIIFLITVPVVLETVELELPDVVFEPTTTKPENVLLSIRSADTDGDGLPNP
ESTACEVYWGQTPVDSRQLLERGQAKLEKLLEDIGGPQNITEENFPEVHIRGDVNTPYQCIGGVIYTMQYAGFQKIGFIS
EPAPGSGTVGRL

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=162, Percent_Identity=26.5432098765432, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 18733; Mature: 18601

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMSVGDKGGEDAPMSEINTTPLVDIMLVLLIIFLITVPVVLETVELELPDVVFEPTTTK
CCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
PENVLLSIRSADTDGDGLPNPESTACEVYWGQTPVDSRQLLERGQAKLEKLLEDIGGPQN
CCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
ITEENFPEVHIRGDVNTPYQCIGGVIYTMQYAGFQKIGFISEPAPGSGTVGRL
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AMSVGDKGGEDAPMSEINTTPLVDIMLVLLIIFLITVPVVLETVELELPDVVFEPTTTK
CCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
PENVLLSIRSADTDGDGLPNPESTACEVYWGQTPVDSRQLLERGQAKLEKLLEDIGGPQN
CCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
ITEENFPEVHIRGDVNTPYQCIGGVIYTMQYAGFQKIGFISEPAPGSGTVGRL
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]