Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yesP [H]

Identifier: 103486242

GI number: 103486242

Start: 757045

End: 757917

Strand: Reverse

Name: yesP [H]

Synonym: Sala_0750

Alternate gene names: 103486242

Gene position: 757917-757045 (Counterclockwise)

Preceding gene: 103486243

Following gene: 103486241

Centisome position: 22.66

GC content: 61.74

Gene sequence:

>873_bases
ATGACGGCGCGCGACCGGCTCGGGGGTTATGCCTTCGTCCTGCCGTTCGTGGCGGCGTACAGCTTCCTGCTGATCGTCCC
CTTTATCATGGGCGCGTGGATCAGTTTCCACCGCGCCGATCTTTTCGGGGCGCGCCAATGGATCGGATTGGATAACTACG
CCCGCCTCTTCGGCGACCCGGTCTTCTACCAGGCGATGGGAACGACATTCCTGCTGGCCCTGATGATCGTGCCGGCGCTG
ACGATCATCACCTTGATGCTTGCGCTGGCGCTGAACCGGGCAACGCGTGCGGCGGCAATATTTCGGGGGTTGTTCTTCTC
CTCGTCGGTGCTTTCGGTCACGATCGTCACCCTGATCTGGCGCTTTGTCCTGACCCCGGACGCCGGGTTGATCGCGAAGC
TGCTAACCGCATTGGGGATGGAGCCGCTGCCATTTCTCAGTCACCCCGATCTGGTCGTCCCTGCGATCGCGCTCACCACG
ATCTGGTGGGGCCTGGGGCTGCCAATGATGTTGTTTCTGGCAGGCTTGCAGCAGATTCCGCAGGACATGTACGAGGCGGC
GGCGCTGGATCGCGCCAGTCGATGGACCGTGTTTCGCCGGATCACGCTTCCCTCGCTTCGCCGCACCACGATTTTGGTGG
TCATGTTGCAGACCGCTGCCCAGCTACAGATATTCGGGCAGGCGCAGTTGCTTACATCGGGCGGACCAAGCGGCAGTTCG
CGGCCGATCGTTCTCTACATCTATGAAATTGCGTTCGGCCGATGGGAACTTGGCTACGCCGTCGCCGCCGCCGAAGTCCT
GTTCGTGCTGGTTCTCGCGCTGACACTGGGACAATATTGGTTCGGCACGCGCGATGAAGGGGCGTCTCGATGA

Upstream 100 bases:

>100_bases
GCATGATACGGATGGGCGACCGCATCGGCCTGCTGATCGATGGCGCCAGTGCGCATCTGTTCGCACAGGATGGCACGGGT
CATCATGCAGGCACGCCTGC

Downstream 100 bases:

>100_bases
GCGCGGCGAACGATCGCAATCGCCTCCCATGGCCCGCTTTGGTCGGCGTGTTGCTGGGCGCAGCCATCATGGTTGCGCCG
CTGGTTTGGACGCTGCTGCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MTARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDPVFYQAMGTTFLLALMIVPAL
TIITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIWRFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTT
IWWGLGLPMMLFLAGLQQIPQDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSS
RPIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR

Sequences:

>Translated_290_residues
MTARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDPVFYQAMGTTFLLALMIVPAL
TIITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIWRFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTT
IWWGLGLPMMLFLAGLQQIPQDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSS
RPIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR
>Mature_289_residues
TARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDPVFYQAMGTTFLLALMIVPALT
IITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIWRFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTTI
WWGLGLPMMLFLAGLQQIPQDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSSR
PIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=256, Percent_Identity=29.296875, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789861, Length=252, Percent_Identity=25.7936507936508, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790465, Length=249, Percent_Identity=30.5220883534137, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32001; Mature: 31870

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TARDRLGGYAFVLPFVAAYSFLLIVPFIMGAWISFHRADLFGARQWIGLDNYARLFGDP
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH
VFYQAMGTTFLLALMIVPALTIITLMLALALNRATRAAAIFRGLFFSSSVLSVTIVTLIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFVLTPDAGLIAKLLTALGMEPLPFLSHPDLVVPAIALTTIWWGLGLPMMLFLAGLQQIP
HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDMYEAAALDRASRWTVFRRITLPSLRRTTILVVMLQTAAQLQIFGQAQLLTSGGPSGSS
HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
RPIVLYIYEIAFGRWELGYAVAAAEVLFVLVLALTLGQYWFGTRDEGASR
CCEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]