| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is gal [H]
Identifier: 103486237
GI number: 103486237
Start: 752340
End: 753260
Strand: Direct
Name: gal [H]
Synonym: Sala_0745
Alternate gene names: 103486237
Gene position: 752340-753260 (Clockwise)
Preceding gene: 103486236
Following gene: 103486238
Centisome position: 22.49
GC content: 59.83
Gene sequence:
>921_bases GTGACCCTCCGCATTGCGCTGATCGGCTTCGGCAAAATCGCGGAAGACCAGCATCTCCCGGCCATCGCTGCCAACCCCGA TTTCGAACTCGCGGCGATCGTTTCGCTCAACCGTCCCAGCCATATTCGATGTCCCGTCTTTTCCACGGTTGGCGACATGT TTGCGGGCCTGCCAGGGGGCATCGACGCCGTCGCCATTTGCACCCCGCCAGTTCCGCGCTTTGCAATTGCGTGCGAGGTC ATCACTGCGGGTCTCCCCGTGCTGTTCGAAAAGCCGCCCACCGCCACCCTGGGGGAACTCGACTATCTGATTGCGCTTGC CCGCTTGCGAAACGTTCCGATCTTTACAGCTTGGCATTCGCAATATGCAGCCGGCGTGCCGGTCGCCGCGCGGGCCCTGA AAGGGGAGGCCGTTACAAGTCTTACAATGCTGTGGCGCGAAGATGTCCGCAAATATCATCCCGGACAGCAATGGATATGG CAGCCAGGAGGGTTTGGCGTGTTCGATCCCGCGATCAATGGTTTTTCGATCCTCAACAACATCCTGGACGAGCCGCTCCT GGTCAACCGGGTATCGATGCTGTTCCCGGCAAACCGGCAAACGCCCATTTCGGCCGAAGTTCTTTTCCATGGAGACGATC GCAAAGCCATACTGGACTGGCGTGGCGGGGATGAAGATGAATGGAAGATCCAGATTGAAACGGCGTCGGGCAAGTCGGTT CGCCTGATGGAAGGGGGCGCTCAACTCGAGATCGACGGCGCGCCGCGAAGTTTGCCGCCGCGCAGCGAATATCGCGCCAT CTATGAGGATTTCGCCGACGTCGTGCGTCGCCGGTGCAGCAAGATCGATCGGGATCCGCTGCGTATCGTTGCTGACTGCT TTCTGGCCGCCGAACGAAATGCGGGGGACGATTTTGCCTGA
Upstream 100 bases:
>100_bases TTGGCCTTGGCGGTGCTCTCTATCGCGCGGGCGACACAGTGACTCAGGTTCATCAACGCGCGGCCCGGTTTGTGGCTACG CTCAAACCGGGGGCGCGCCA
Downstream 100 bases:
>100_bases AATTGGCCCTCCCTTTCAATGTTTTCGGTTGTATGCATGTCCGCGAAGAGCTGGAGGGCAGTTGAGTGACTGAGCAAACG GGATTGAACACGTCGTCGGC
Product: D-galactose 1-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MTLRIALIGFGKIAEDQHLPAIAANPDFELAAIVSLNRPSHIRCPVFSTVGDMFAGLPGGIDAVAICTPPVPRFAIACEV ITAGLPVLFEKPPTATLGELDYLIALARLRNVPIFTAWHSQYAAGVPVAARALKGEAVTSLTMLWREDVRKYHPGQQWIW QPGGFGVFDPAINGFSILNNILDEPLLVNRVSMLFPANRQTPISAEVLFHGDDRKAILDWRGGDEDEWKIQIETASGKSV RLMEGGAQLEIDGAPRSLPPRSEYRAIYEDFADVVRRRCSKIDRDPLRIVADCFLAAERNAGDDFA
Sequences:
>Translated_306_residues MTLRIALIGFGKIAEDQHLPAIAANPDFELAAIVSLNRPSHIRCPVFSTVGDMFAGLPGGIDAVAICTPPVPRFAIACEV ITAGLPVLFEKPPTATLGELDYLIALARLRNVPIFTAWHSQYAAGVPVAARALKGEAVTSLTMLWREDVRKYHPGQQWIW QPGGFGVFDPAINGFSILNNILDEPLLVNRVSMLFPANRQTPISAEVLFHGDDRKAILDWRGGDEDEWKIQIETASGKSV RLMEGGAQLEIDGAPRSLPPRSEYRAIYEDFADVVRRRCSKIDRDPLRIVADCFLAAERNAGDDFA >Mature_305_residues TLRIALIGFGKIAEDQHLPAIAANPDFELAAIVSLNRPSHIRCPVFSTVGDMFAGLPGGIDAVAICTPPVPRFAIACEVI TAGLPVLFEKPPTATLGELDYLIALARLRNVPIFTAWHSQYAAGVPVAARALKGEAVTSLTMLWREDVRKYHPGQQWIWQ PGGFGVFDPAINGFSILNNILDEPLLVNRVSMLFPANRQTPISAEVLFHGDDRKAILDWRGGDEDEWKIQIETASGKSVR LMEGGAQLEIDGAPRSLPPRSEYRAIYEDFADVVRRRCSKIDRDPLRIVADCFLAAERNAGDDFA
Specific function: Unknown
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000683 - InterPro: IPR004104 [H]
Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]
EC number: =1.1.1.48 [H]
Molecular weight: Translated: 33585; Mature: 33454
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRIALIGFGKIAEDQHLPAIAANPDFELAAIVSLNRPSHIRCPVFSTVGDMFAGLPGG CEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEEEECCCCCEECCHHHHHHHHHHCCCCC IDAVAICTPPVPRFAIACEVITAGLPVLFEKPPTATLGELDYLIALARLRNVPIFTAWHS CCEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC QYAAGVPVAARALKGEAVTSLTMLWREDVRKYHPGQQWIWQPGGFGVFDPAINGFSILNN CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHH ILDEPLLVNRVSMLFPANRQTPISAEVLFHGDDRKAILDWRGGDEDEWKIQIETASGKSV HHCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCEE RLMEGGAQLEIDGAPRSLPPRSEYRAIYEDFADVVRRRCSKIDRDPLRIVADCFLAAERN EEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC AGDDFA CCCCCC >Mature Secondary Structure TLRIALIGFGKIAEDQHLPAIAANPDFELAAIVSLNRPSHIRCPVFSTVGDMFAGLPGG EEEEEEEECCCCCCCCCCCEEECCCCCEEEEEEEECCCCCEECCHHHHHHHHHHCCCCC IDAVAICTPPVPRFAIACEVITAGLPVLFEKPPTATLGELDYLIALARLRNVPIFTAWHS CCEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC QYAAGVPVAARALKGEAVTSLTMLWREDVRKYHPGQQWIWQPGGFGVFDPAINGFSILNN CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHH ILDEPLLVNRVSMLFPANRQTPISAEVLFHGDDRKAILDWRGGDEDEWKIQIETASGKSV HHCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCEE RLMEGGAQLEIDGAPRSLPPRSEYRAIYEDFADVVRRRCSKIDRDPLRIVADCFLAAERN EEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC AGDDFA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2503815 [H]