Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103486231

Identifier: 103486231

GI number: 103486231

Start: 744038

End: 745084

Strand: Direct

Name: 103486231

Synonym: Sala_0739

Alternate gene names: NA

Gene position: 744038-745084 (Clockwise)

Preceding gene: 103486228

Following gene: 103486235

Centisome position: 22.24

GC content: 58.26

Gene sequence:

>1047_bases
ATGAAAAAGCTCGGGTTTCTGGCCGCCGGACTGTTTTCGCTTTTCGCGCAAGCGGCCGACGCGAGCGAGCCGCTTTTCGT
CCCGGTTCTTACGGTTGATTTTCCCGACCCGTTCATATTGCAGAACGGCAACGAATTTCTGGCCTACGCCACGAACGCCA
CGGGTGACCGCGCCAATGTCCAGATGGCGCGATCAACCAACCTTGTCGACTGGGTCCAGATTTCGGACGGCAGCAAATTG
CACGACGCCATGCCGACAATGCCCGACTGGGCACGCTCAGGATTTACATGGGCGCCCGAAGTGTTGAAAACCGACGCAGG
TTTTGTGCTGCATTTTACCGCGCGGGACAAAAGGAGTGACCTTCAATGTTTGGGGGCCGCATTCAGCGCCAACCCTCTGG
GCCCGTTTGTCTCGACGGCGAAAGAGCCGCTTGTGTGCCAGACCGACTTGGGCGGCACGATCGACTCCCACGCCTTTCGC
GACGACGACGGGCAGTTATATCTTTACTACAAGAATGACGGCAACAACCCGCAGTTCGGAAAGCCGACCGACATCTACGT
CCAGCGGCTTACCGCCGATGGGCTTAACGTTACGGGCGAAGCCGTCAGGCTGCTGCGAAACGATACGCCCTGGGAGGCGC
ATGTCATCGAAGCGCCGACGATGGTTCGGAAAGATGGAAGCTACACACTTTTCTTTTCGGCCAATCATTTTGGCTGGGAA
CCGAACCAGCGCCTGTCCCCCTATGCGGTTGGCTATGCCACATGCGAGGGCCCGATGGGCCCCTGCACCGATGCACCCAA
CAACCCGATCCTGAACAGCTTTCATGACAAAAGGGCAGGCTGTTTAAGCGGTCCGGGTCATCAGTCGGTGTTCGATGTGG
GTGATCGTTCGTTTGTGTCGTTTCACGCGTGGGCGGCCACCAGCGGTTGCCGCAAGTTTGATAACAAACGTTATATGTAT
ATCGCGCCGCTGCTGTGGGGGGATGGCAAGCCGCAGCTCGGCGTCAGCCTGAGATCGCCTCCGGTGCAAGGCAAGCGCGC
GAAATAA

Upstream 100 bases:

>100_bases
CAATTGAGATGATTTATATGATAAACGATCGAGGCAGACAACAGGCGGGATTGGGGGTGGTGGCTGTCGAACCACAGACC
GCCGCGATGAAGGATGGACG

Downstream 100 bases:

>100_bases
AATCCCAATGCGGCGGCATATGCTCGGCCATTTGTCGATAGCTTGATCGCATTTTGTCAAGCATGTCGCGTGCAATGTCG
GGATCGATCGCATTCACCGC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Xylosidase; Endo-1 4-Beta-Xylanase; Arabinan Endo-1 5-Alpha-L-Arabinosidase A; Glycosyl Hydrolase Family; Endo-1 4-Beta-Xylanase D; Glycoside Hydrolase; Family; Arabinan Endo-1 5-Alpha-L-Arabinosidase; Aldose 1-Epimerase; LPXTG-Motif Cell Wall Anchor Domain Protein; Alpha-N-Arabinofuranosidase; Xylosidase/Arabinosidase; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family Beta-Glycosidase; Glycosyl Hydrolases; Xylosidase/Arabinofuranosidase; Hydrolase; Xylosidase Glycosyl Hydrolase Family Protein; Exported Glycosylhydrolase

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANVQMARSTNLVDWVQISDGSKL
HDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSDLQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFR
DDDGQLYLYYKNDGNNPQFGKPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE
PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVSFHAWAATSGCRKFDNKRYMY
IAPLLWGDGKPQLGVSLRSPPVQGKRAK

Sequences:

>Translated_348_residues
MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANVQMARSTNLVDWVQISDGSKL
HDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSDLQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFR
DDDGQLYLYYKNDGNNPQFGKPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE
PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVSFHAWAATSGCRKFDNKRYMY
IAPLLWGDGKPQLGVSLRSPPVQGKRAK
>Mature_348_residues
MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANVQMARSTNLVDWVQISDGSKL
HDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSDLQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFR
DDDGQLYLYYKNDGNNPQFGKPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE
PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVSFHAWAATSGCRKFDNKRYMY
IAPLLWGDGKPQLGVSLRSPPVQGKRAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38138; Mature: 38138

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANV
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCEEEEEEECCCCCCCEE
QMARSTNLVDWVQISDGSKLHDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSD
EEECCCCCEEEEEECCCCCHHHCCCCCCHHHHCCCCCCHHHHCCCCCEEEEEECCCCCCC
LQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFRDDDGQLYLYYKNDGNNPQFG
HHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCC
KPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE
CCHHHEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCEEEEECCCEEEEEECCCCCCC
PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVS
CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCEEE
FHAWAATSGCRKFDNKRYMYIAPLLWGDGKPQLGVSLRSPPVQGKRAK
EEEHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANV
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCEEEEEEECCCCCCCEE
QMARSTNLVDWVQISDGSKLHDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSD
EEECCCCCEEEEEECCCCCHHHCCCCCCHHHHCCCCCCHHHHCCCCCEEEEEECCCCCCC
LQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFRDDDGQLYLYYKNDGNNPQFG
HHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCC
KPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE
CCHHHEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCEEEEECCCEEEEEECCCCCCC
PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVS
CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCEEE
FHAWAATSGCRKFDNKRYMYIAPLLWGDGKPQLGVSLRSPPVQGKRAK
EEEHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA