| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103486231
Identifier: 103486231
GI number: 103486231
Start: 744038
End: 745084
Strand: Direct
Name: 103486231
Synonym: Sala_0739
Alternate gene names: NA
Gene position: 744038-745084 (Clockwise)
Preceding gene: 103486228
Following gene: 103486235
Centisome position: 22.24
GC content: 58.26
Gene sequence:
>1047_bases ATGAAAAAGCTCGGGTTTCTGGCCGCCGGACTGTTTTCGCTTTTCGCGCAAGCGGCCGACGCGAGCGAGCCGCTTTTCGT CCCGGTTCTTACGGTTGATTTTCCCGACCCGTTCATATTGCAGAACGGCAACGAATTTCTGGCCTACGCCACGAACGCCA CGGGTGACCGCGCCAATGTCCAGATGGCGCGATCAACCAACCTTGTCGACTGGGTCCAGATTTCGGACGGCAGCAAATTG CACGACGCCATGCCGACAATGCCCGACTGGGCACGCTCAGGATTTACATGGGCGCCCGAAGTGTTGAAAACCGACGCAGG TTTTGTGCTGCATTTTACCGCGCGGGACAAAAGGAGTGACCTTCAATGTTTGGGGGCCGCATTCAGCGCCAACCCTCTGG GCCCGTTTGTCTCGACGGCGAAAGAGCCGCTTGTGTGCCAGACCGACTTGGGCGGCACGATCGACTCCCACGCCTTTCGC GACGACGACGGGCAGTTATATCTTTACTACAAGAATGACGGCAACAACCCGCAGTTCGGAAAGCCGACCGACATCTACGT CCAGCGGCTTACCGCCGATGGGCTTAACGTTACGGGCGAAGCCGTCAGGCTGCTGCGAAACGATACGCCCTGGGAGGCGC ATGTCATCGAAGCGCCGACGATGGTTCGGAAAGATGGAAGCTACACACTTTTCTTTTCGGCCAATCATTTTGGCTGGGAA CCGAACCAGCGCCTGTCCCCCTATGCGGTTGGCTATGCCACATGCGAGGGCCCGATGGGCCCCTGCACCGATGCACCCAA CAACCCGATCCTGAACAGCTTTCATGACAAAAGGGCAGGCTGTTTAAGCGGTCCGGGTCATCAGTCGGTGTTCGATGTGG GTGATCGTTCGTTTGTGTCGTTTCACGCGTGGGCGGCCACCAGCGGTTGCCGCAAGTTTGATAACAAACGTTATATGTAT ATCGCGCCGCTGCTGTGGGGGGATGGCAAGCCGCAGCTCGGCGTCAGCCTGAGATCGCCTCCGGTGCAAGGCAAGCGCGC GAAATAA
Upstream 100 bases:
>100_bases CAATTGAGATGATTTATATGATAAACGATCGAGGCAGACAACAGGCGGGATTGGGGGTGGTGGCTGTCGAACCACAGACC GCCGCGATGAAGGATGGACG
Downstream 100 bases:
>100_bases AATCCCAATGCGGCGGCATATGCTCGGCCATTTGTCGATAGCTTGATCGCATTTTGTCAAGCATGTCGCGTGCAATGTCG GGATCGATCGCATTCACCGC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Beta-Xylosidase; Endo-1 4-Beta-Xylanase; Arabinan Endo-1 5-Alpha-L-Arabinosidase A; Glycosyl Hydrolase Family; Endo-1 4-Beta-Xylanase D; Glycoside Hydrolase; Family; Arabinan Endo-1 5-Alpha-L-Arabinosidase; Aldose 1-Epimerase; LPXTG-Motif Cell Wall Anchor Domain Protein; Alpha-N-Arabinofuranosidase; Xylosidase/Arabinosidase; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family Beta-Glycosidase; Glycosyl Hydrolases; Xylosidase/Arabinofuranosidase; Hydrolase; Xylosidase Glycosyl Hydrolase Family Protein; Exported Glycosylhydrolase
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANVQMARSTNLVDWVQISDGSKL HDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSDLQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFR DDDGQLYLYYKNDGNNPQFGKPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVSFHAWAATSGCRKFDNKRYMY IAPLLWGDGKPQLGVSLRSPPVQGKRAK
Sequences:
>Translated_348_residues MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANVQMARSTNLVDWVQISDGSKL HDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSDLQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFR DDDGQLYLYYKNDGNNPQFGKPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVSFHAWAATSGCRKFDNKRYMY IAPLLWGDGKPQLGVSLRSPPVQGKRAK >Mature_348_residues MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANVQMARSTNLVDWVQISDGSKL HDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSDLQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFR DDDGQLYLYYKNDGNNPQFGKPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVSFHAWAATSGCRKFDNKRYMY IAPLLWGDGKPQLGVSLRSPPVQGKRAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38138; Mature: 38138
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANV CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCEEEEEEECCCCCCCEE QMARSTNLVDWVQISDGSKLHDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSD EEECCCCCEEEEEECCCCCHHHCCCCCCHHHHCCCCCCHHHHCCCCCEEEEEECCCCCCC LQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFRDDDGQLYLYYKNDGNNPQFG HHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCC KPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE CCHHHEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCEEEEECCCEEEEEECCCCCCC PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVS CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCEEE FHAWAATSGCRKFDNKRYMYIAPLLWGDGKPQLGVSLRSPPVQGKRAK EEEHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCC >Mature Secondary Structure MKKLGFLAAGLFSLFAQAADASEPLFVPVLTVDFPDPFILQNGNEFLAYATNATGDRANV CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCEEEEEEECCCCCCCEE QMARSTNLVDWVQISDGSKLHDAMPTMPDWARSGFTWAPEVLKTDAGFVLHFTARDKRSD EEECCCCCEEEEEECCCCCHHHCCCCCCHHHHCCCCCCHHHHCCCCCEEEEEECCCCCCC LQCLGAAFSANPLGPFVSTAKEPLVCQTDLGGTIDSHAFRDDDGQLYLYYKNDGNNPQFG HHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCCCCCCEECCCCEEEEEEECCCCCCCCC KPTDIYVQRLTADGLNVTGEAVRLLRNDTPWEAHVIEAPTMVRKDGSYTLFFSANHFGWE CCHHHEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCEEEEECCCEEEEEECCCCCCC PNQRLSPYAVGYATCEGPMGPCTDAPNNPILNSFHDKRAGCLSGPGHQSVFDVGDRSFVS CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCEEE FHAWAATSGCRKFDNKRYMYIAPLLWGDGKPQLGVSLRSPPVQGKRAK EEEHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA