| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is dnaJ [C]
Identifier: 103486139
GI number: 103486139
Start: 659601
End: 660131
Strand: Reverse
Name: dnaJ [C]
Synonym: Sala_0646
Alternate gene names: 103486139
Gene position: 660131-659601 (Counterclockwise)
Preceding gene: 103486144
Following gene: 103486138
Centisome position: 19.73
GC content: 68.55
Gene sequence:
>531_bases GTGCCCGGCTGCCGCGAGGCCGGAGAGTTTCGCGCACCCGCATCGGCGCGCCGCTCGTCCGACGGCCCGCCGCCCTGGCG CTGGCTGTGCCTCGAACATGTGCGCGCGTTCAACGCGGGCTATAATTTTTTCGAGGGGATGAGCGCCGATCAGATCATGG CGGCGCAATCGCCAACCGCGGGCTGGGAAACCGAAAGCCGCGCCTTTCGGCCCGCGGGCAGCGCCGACCTGCCGCCGCGC TGGGCCGATTTCAAGGATCCGATGGACGCGCTCGGCGCGCGGTTCCGGCAGCGGATGGACGAAGCGCGACGCGAGGTGGC GAACCCGCGCTTCACGCGCGAGGAGCATCGCGCCATGCAGCTGATGGATTTGCCGCCCGACGCCGACCGCGCCGCGCTCC GCCGCCGCTACAGCGAGCTTGTACGCAAATATCATCCCGACCGTAATGGCGGCGACCGTCGTTTCGAGGCGCGACTCGGC CAAGTGGTCGAAGCTTATCAGTTGCTGAGGAAAACCGCGGCGTTCGCATAG
Upstream 100 bases:
>100_bases CTCCTCCCTCCCCGCCCTTCGATTCCGAAAGCCCGTTTTGCCCTCCTCCCCCCGCCCTAACCGTTTTCATGGCCGCGTGC CGCGCGAGGCGCCCTGCGCG
Downstream 100 bases:
>100_bases GAGAAAGGCGATGACCGATTTGAATGCGGCCCGGATCGAGGTGGTGCGACGGCACATGGCGCTGGAGATCGCGCATGATT GGGACGGCGTCATCGCGACC
Product: heat shock protein DnaJ-like protein
Products: NA
Alternate protein names: ORF2 [H]
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MPGCREAGEFRAPASARRSSDGPPPWRWLCLEHVRAFNAGYNFFEGMSADQIMAAQSPTAGWETESRAFRPAGSADLPPR WADFKDPMDALGARFRQRMDEARREVANPRFTREEHRAMQLMDLPPDADRAALRRRYSELVRKYHPDRNGGDRRFEARLG QVVEAYQLLRKTAAFA
Sequences:
>Translated_176_residues MPGCREAGEFRAPASARRSSDGPPPWRWLCLEHVRAFNAGYNFFEGMSADQIMAAQSPTAGWETESRAFRPAGSADLPPR WADFKDPMDALGARFRQRMDEARREVANPRFTREEHRAMQLMDLPPDADRAALRRRYSELVRKYHPDRNGGDRRFEARLG QVVEAYQLLRKTAAFA >Mature_175_residues PGCREAGEFRAPASARRSSDGPPPWRWLCLEHVRAFNAGYNFFEGMSADQIMAAQSPTAGWETESRAFRPAGSADLPPRW ADFKDPMDALGARFRQRMDEARREVANPRFTREEHRAMQLMDLPPDADRAALRRRYSELVRKYHPDRNGGDRRFEARLGQ VVEAYQLLRKTAAFA
Specific function: Interacts With Dnak To Disassemble A Protein Complex At The Phage Lambda Origin Of Replication. Stimulates, Jointly With Grpe, The Atpase Activity Of Dnak. [C]
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001623 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ [H]
EC number: NA
Molecular weight: Translated: 20171; Mature: 20040
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGCREAGEFRAPASARRSSDGPPPWRWLCLEHVRAFNAGYNFFEGMSADQIMAAQSPTA CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCCCC GWETESRAFRPAGSADLPPRWADFKDPMDALGARFRQRMDEARREVANPRFTREEHRAMQ CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LMDLPPDADRAALRRRYSELVRKYHPDRNGGDRRFEARLGQVVEAYQLLRKTAAFA HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PGCREAGEFRAPASARRSSDGPPPWRWLCLEHVRAFNAGYNFFEGMSADQIMAAQSPTA CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCCCC GWETESRAFRPAGSADLPPRWADFKDPMDALGARFRQRMDEARREVANPRFTREEHRAMQ CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LMDLPPDADRAALRRRYSELVRKYHPDRNGGDRRFEARLGQVVEAYQLLRKTAAFA HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1917840 [H]