Click here to switch to the map view.

The map label for this gene is sdcS [H]

Identifier: 103485977

GI number: 103485977

Start: 500415

End: 501821

Strand: Reverse

Name: sdcS [H]

Synonym: Sala_0484

Alternate gene names: 103485977

Gene position: 501821-500415 (Counterclockwise)

Preceding gene: 103485978

Following gene: 103485976

Centisome position: 15.0

GC content: 69.51

Gene sequence:

>1407_bases
ATGACGCGCACGCGCTGGTTGGGCTTGATCGGCGGGCTCGTCGTCTTTTGCACCATGCTCCTTGCCCCCGCCCCTGCGGG
CATGGAACTCACCGCCTGGCGCATCGCCGCCCTCACCGTCTTGATGGCGATCTGGTGGATGACCGAGGCGCTGCCGCTCA
CCGTCACCGCGCTGCTGCCCTTTCTCACCGTTCCCACCTTCGGGGTGATGGACGCCAATGCCATCGCCAAGGAATATTAT
TCGCCGATCCTGTTCCTGATCCTCGGCGGGGCTTTTCTCGCGCTCGCGATCGAGCGCGTCGGACTGCACCGGCGGCTGGC
GCTCGCGCTGTTGAAGCGCGCCTCGCCGACCGCATCGGGGCTGCTCTTCGCCTTCATGGCAGCGACCGCGCTGCTCAGCA
TGTTCATCTCGAACACTTCGACGACGCTCATCATGATCCCCATCGCGCTCGCTGTCGTGCGCGCGGGCGGGGTGCGGGAG
GGCGAGACGAACGGTTTTGCCGGCGCGGTGATGATGGGCATCGCCTTTGCCGCCTCGCTCGGCGGGCTCGGCACGCTCGT
CGGCAGCCCGACCAACGCGATCGCCGCGGGGCTGATCGAAAAGGCGCTGGACCTTCGCATCGCCTTCCTCGACTGGGCGA
TCTATGGTGTGCCGGTGGTGATCCTGTCGGTGCCGGTCGCCATGTTCGCCGTCGCGCGCGTCCAGCGGCTCGCCGACCAT
CCGTTCGACGGCCGCGCCGCCGCCGCCGCGCTCGGCAATCAGGCGATCTGGTCGACTGCCGAGCGCCGCGTCGTCCCCAT
CTTCCTCGCCGTCCTCGCTGCCTGGATCGCGCAGCCGTGGCTTGAACCCTTCCTGCCCGACGGCGCGCTGACCGACGGCA
CGATTGCCGTCGCCGGCAGCCTGCTCCTGTTCGTGCTGCCCGACGGCACCGGCCGCCCGCTCCTGATCTGGAAAGAGGCC
GACCGCGCGCCGTGGGGCGTCATCATGATGTTCGGCGGCGGCCTCGCGCTCGCCGCCGCAATCACCGCGAGCGGGCTTGC
CGCATGGCTGGGCGCCGTCCTCGCGCCGCTCGGCAGCATCCCGACGATCGCCCTCGCCGCGATCATCGTCGCGCTGACCA
TCCTCGTCACCGAATTTGCGAGCAATGTCGCGACCGCGAGCGGGATCATGCCCGTGCTCGCGGCGCTGATCGCCGCCACC
GGCGCCGACCCCATATTGCTCGCGCTTCCCGTCGCGATGGCGGCGAGCTGGGGCTTCATGCTGCCGTCGGGCACCGGCCC
CAATGCGCTGGCGTGGGCGACGGGGCATATCGCGCTCCCCCGCATTTTGAAGGCGGGGTTCGCGCTCGACATCATCGGCG
TGCCGCTGCTCATCGGCGTGATCTGGGCGATCGCGGCGATCGCCTGA

Upstream 100 bases:

>100_bases
CCCGGCGAAGGCCGGGATCTCGCCGGTGCGGTAATCCGATAGGGTGAGATCCCGGCCTTCGCCGGGATGACGAGGTGACA
GGGACGGAAGAGGGGGACGA

Downstream 100 bases:

>100_bases
CCCCGCGCAATATAGTTTCAAACGAAACTTGGTGCGCTATAAGGACCGCACCATCATCAGGAGCAGTTTCATGGCCATGC
GCGGCAAACCCAAGACGAAT

Product: anion transporter

Products: NA

Alternate protein names: Na(+)/dicarboxylate symporter [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MTRTRWLGLIGGLVVFCTMLLAPAPAGMELTAWRIAALTVLMAIWWMTEALPLTVTALLPFLTVPTFGVMDANAIAKEYY
SPILFLILGGAFLALAIERVGLHRRLALALLKRASPTASGLLFAFMAATALLSMFISNTSTTLIMIPIALAVVRAGGVRE
GETNGFAGAVMMGIAFAASLGGLGTLVGSPTNAIAAGLIEKALDLRIAFLDWAIYGVPVVILSVPVAMFAVARVQRLADH
PFDGRAAAAALGNQAIWSTAERRVVPIFLAVLAAWIAQPWLEPFLPDGALTDGTIAVAGSLLLFVLPDGTGRPLLIWKEA
DRAPWGVIMMFGGGLALAAAITASGLAAWLGAVLAPLGSIPTIALAAIIVALTILVTEFASNVATASGIMPVLAALIAAT
GADPILLALPVAMAASWGFMLPSGTGPNALAWATGHIALPRILKAGFALDIIGVPLLIGVIWAIAAIA

Sequences:

>Translated_468_residues
MTRTRWLGLIGGLVVFCTMLLAPAPAGMELTAWRIAALTVLMAIWWMTEALPLTVTALLPFLTVPTFGVMDANAIAKEYY
SPILFLILGGAFLALAIERVGLHRRLALALLKRASPTASGLLFAFMAATALLSMFISNTSTTLIMIPIALAVVRAGGVRE
GETNGFAGAVMMGIAFAASLGGLGTLVGSPTNAIAAGLIEKALDLRIAFLDWAIYGVPVVILSVPVAMFAVARVQRLADH
PFDGRAAAAALGNQAIWSTAERRVVPIFLAVLAAWIAQPWLEPFLPDGALTDGTIAVAGSLLLFVLPDGTGRPLLIWKEA
DRAPWGVIMMFGGGLALAAAITASGLAAWLGAVLAPLGSIPTIALAAIIVALTILVTEFASNVATASGIMPVLAALIAAT
GADPILLALPVAMAASWGFMLPSGTGPNALAWATGHIALPRILKAGFALDIIGVPLLIGVIWAIAAIA
>Mature_467_residues
TRTRWLGLIGGLVVFCTMLLAPAPAGMELTAWRIAALTVLMAIWWMTEALPLTVTALLPFLTVPTFGVMDANAIAKEYYS
PILFLILGGAFLALAIERVGLHRRLALALLKRASPTASGLLFAFMAATALLSMFISNTSTTLIMIPIALAVVRAGGVREG
ETNGFAGAVMMGIAFAASLGGLGTLVGSPTNAIAAGLIEKALDLRIAFLDWAIYGVPVVILSVPVAMFAVARVQRLADHP
FDGRAAAAALGNQAIWSTAERRVVPIFLAVLAAWIAQPWLEPFLPDGALTDGTIAVAGSLLLFVLPDGTGRPLLIWKEAD
RAPWGVIMMFGGGLALAAAITASGLAAWLGAVLAPLGSIPTIALAAIIVALTILVTEFASNVATASGIMPVLAALIAATG
ADPILLALPVAMAASWGFMLPSGTGPNALAWATGHIALPRILKAGFALDIIGVPLLIGVIWAIAAIA

Specific function: Mediates the transport of dicarboxylates across the cytoplasmic membrane via a Na(+)-electrochemical gradient [H]

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SLC13A transporter (TC 2.A.47) family. NADC subfamily [H]

Homologues:

Organism=Homo sapiens, GI29171306, Length=502, Percent_Identity=30.2788844621514, Blast_Score=207, Evalue=2e-53,
Organism=Homo sapiens, GI4506979, Length=506, Percent_Identity=29.2490118577075, Blast_Score=190, Evalue=3e-48,
Organism=Homo sapiens, GI31377715, Length=526, Percent_Identity=29.6577946768061, Blast_Score=189, Evalue=5e-48,
Organism=Homo sapiens, GI301069349, Length=495, Percent_Identity=29.6969696969697, Blast_Score=188, Evalue=1e-47,
Organism=Homo sapiens, GI58761541, Length=518, Percent_Identity=29.7297297297297, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI225637549, Length=555, Percent_Identity=26.8468468468468, Blast_Score=167, Evalue=3e-41,
Organism=Homo sapiens, GI219802232, Length=446, Percent_Identity=29.1479820627803, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI225637552, Length=473, Percent_Identity=27.2727272727273, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI301069353, Length=467, Percent_Identity=28.051391862955, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI31795546, Length=337, Percent_Identity=25.5192878338279, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI301069346, Length=156, Percent_Identity=39.7435897435897, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI19923838, Length=321, Percent_Identity=28.6604361370716, Blast_Score=112, Evalue=6e-25,
Organism=Escherichia coli, GI1786829, Length=493, Percent_Identity=22.920892494929, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71988385, Length=498, Percent_Identity=32.3293172690763, Blast_Score=224, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI32565804, Length=462, Percent_Identity=32.6839826839827, Blast_Score=209, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI71989118, Length=495, Percent_Identity=28.8888888888889, Blast_Score=190, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17551790, Length=498, Percent_Identity=24.0963855421687, Blast_Score=170, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI32564681, Length=485, Percent_Identity=24.7422680412371, Blast_Score=158, Evalue=5e-39,
Organism=Saccharomyces cerevisiae, GI6319885, Length=445, Percent_Identity=25.1685393258427, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322263, Length=421, Percent_Identity=24.7030878859857, Blast_Score=66, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281366409, Length=493, Percent_Identity=29.4117647058824, Blast_Score=168, Evalue=6e-42,
Organism=Drosophila melanogaster, GI17737623, Length=493, Percent_Identity=29.4117647058824, Blast_Score=168, Evalue=6e-42,
Organism=Drosophila melanogaster, GI24666468, Length=493, Percent_Identity=29.4117647058824, Blast_Score=168, Evalue=6e-42,
Organism=Drosophila melanogaster, GI45551633, Length=493, Percent_Identity=29.4117647058824, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI281362116, Length=498, Percent_Identity=28.3132530120482, Blast_Score=165, Evalue=5e-41,
Organism=Drosophila melanogaster, GI281362114, Length=498, Percent_Identity=28.1124497991968, Blast_Score=158, Evalue=7e-39,
Organism=Drosophila melanogaster, GI281362112, Length=498, Percent_Identity=28.1124497991968, Blast_Score=158, Evalue=7e-39,
Organism=Drosophila melanogaster, GI78706796, Length=493, Percent_Identity=26.9776876267748, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI78706798, Length=493, Percent_Identity=26.9776876267748, Blast_Score=117, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898 [H]

Pfam domain/function: PF00939 Na_sulph_symp [H]

EC number: NA

Molecular weight: Translated: 48239; Mature: 48108

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTRWLGLIGGLVVFCTMLLAPAPAGMELTAWRIAALTVLMAIWWMTEALPLTVTALLP
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLTVPTFGVMDANAIAKEYYSPILFLILGGAFLALAIERVGLHRRLALALLKRASPTASG
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LLFAFMAATALLSMFISNTSTTLIMIPIALAVVRAGGVREGETNGFAGAVMMGIAFAASL
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
GGLGTLVGSPTNAIAAGLIEKALDLRIAFLDWAIYGVPVVILSVPVAMFAVARVQRLADH
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFDGRAAAAALGNQAIWSTAERRVVPIFLAVLAAWIAQPWLEPFLPDGALTDGTIAVAGS
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC
LLLFVLPDGTGRPLLIWKEADRAPWGVIMMFGGGLALAAAITASGLAAWLGAVLAPLGSI
EEEEEECCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PTIALAAIIVALTILVTEFASNVATASGIMPVLAALIAATGADPILLALPVAMAASWGFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
LPSGTGPNALAWATGHIALPRILKAGFALDIIGVPLLIGVIWAIAAIA
CCCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRTRWLGLIGGLVVFCTMLLAPAPAGMELTAWRIAALTVLMAIWWMTEALPLTVTALLP
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLTVPTFGVMDANAIAKEYYSPILFLILGGAFLALAIERVGLHRRLALALLKRASPTASG
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LLFAFMAATALLSMFISNTSTTLIMIPIALAVVRAGGVREGETNGFAGAVMMGIAFAASL
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
GGLGTLVGSPTNAIAAGLIEKALDLRIAFLDWAIYGVPVVILSVPVAMFAVARVQRLADH
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFDGRAAAAALGNQAIWSTAERRVVPIFLAVLAAWIAQPWLEPFLPDGALTDGTIAVAGS
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC
LLLFVLPDGTGRPLLIWKEADRAPWGVIMMFGGGLALAAAITASGLAAWLGAVLAPLGSI
EEEEEECCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PTIALAAIIVALTILVTEFASNVATASGIMPVLAALIAATGADPILLALPVAMAASWGFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
LPSGTGPNALAWATGHIALPRILKAGFALDIIGVPLLIGVIWAIAAIA
CCCCCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA