| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485955
Identifier: 103485955
GI number: 103485955
Start: 473876
End: 474244
Strand: Reverse
Name: 103485955
Synonym: Sala_0462
Alternate gene names: NA
Gene position: 474244-473876 (Counterclockwise)
Preceding gene: 103485958
Following gene: 103485953
Centisome position: 14.18
GC content: 67.48
Gene sequence:
>369_bases ATGACGACTCCTCGCTTGCCCCTGCCGCGCCGCCACGAGCGCACCCGCGTCGCCATCGACGTCACCGTCAATGGCGTGCT GAACTTTGTCGAAGGCCGCATCACCGACCTGTCGGAGGGCGGCGCGCGAATCGACGGCGCCTCGATGCCCGCGCGCTCGC GCTGCGAAATCCATTATGGCGGGCAGGTCGTCTATGCCGTCGTAATGTGGTCGGAGGTCGACCGCATGGGCGTGCGCTTT CCCTATGAGCTGACCCACGGCCCGCTCTACAACGCGCTCGATCGCGCACGCGTCGCGGCGTTGATCGACCCCGCGCAGAT TTTCCACGGCCGACGCACCGTCACCTTCGGCCGCCGCGGGTTGAACTGA
Upstream 100 bases:
>100_bases CCCATAGCGGCAAGCGCGACCGAATCGAAAGGCAAAATTGCCTCGTCGCGCGCGATCATCGTTACCGGATTATTTACCAT GCCGGGCTTAGCATCGCCGC
Downstream 100 bases:
>100_bases GGCGCGAGAATCGCGAGCATCAGATCGGCGCGCTACCAATCCCGTTCGTGTCGAGCGAAGTCGAGACACCCCTCGGAACG GCACAGGATCGAGGGGCATC
Product: type IV pilus assembly PilZ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MTTPRLPLPRRHERTRVAIDVTVNGVLNFVEGRITDLSEGGARIDGASMPARSRCEIHYGGQVVYAVVMWSEVDRMGVRF PYELTHGPLYNALDRARVAALIDPAQIFHGRRTVTFGRRGLN
Sequences:
>Translated_122_residues MTTPRLPLPRRHERTRVAIDVTVNGVLNFVEGRITDLSEGGARIDGASMPARSRCEIHYGGQVVYAVVMWSEVDRMGVRF PYELTHGPLYNALDRARVAALIDPAQIFHGRRTVTFGRRGLN >Mature_121_residues TTPRLPLPRRHERTRVAIDVTVNGVLNFVEGRITDLSEGGARIDGASMPARSRCEIHYGGQVVYAVVMWSEVDRMGVRFP YELTHGPLYNALDRARVAALIDPAQIFHGRRTVTFGRRGLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13674; Mature: 13543
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPRLPLPRRHERTRVAIDVTVNGVLNFVEGRITDLSEGGARIDGASMPARSRCEIHYG CCCCCCCCCCCCCCEEEEEEEEEHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEEEEC GQVVYAVVMWSEVDRMGVRFPYELTHGPLYNALDRARVAALIDPAQIFHGRRTVTFGRRG CEEEEEEEEHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCHHHHHCCCEEEECCCCC LN CC >Mature Secondary Structure TTPRLPLPRRHERTRVAIDVTVNGVLNFVEGRITDLSEGGARIDGASMPARSRCEIHYG CCCCCCCCCCCCCEEEEEEEEEHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEEEEC GQVVYAVVMWSEVDRMGVRFPYELTHGPLYNALDRARVAALIDPAQIFHGRRTVTFGRRG CEEEEEEEEHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCHHHHHCCCEEEECCCCC LN CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA