Click here to switch to the map view.

The map label for this gene is exoI [H]

Identifier: 103485630

GI number: 103485630

Start: 128453

End: 129115

Strand: Reverse

Name: exoI [H]

Synonym: Sala_0134

Alternate gene names: 103485630

Gene position: 129115-128453 (Counterclockwise)

Preceding gene: 103485634

Following gene: 103485628

Centisome position: 3.86

GC content: 61.39

Gene sequence:

>663_bases
ATGAAATGGCTTTTTGTAATCGCACTCGCGCTGACCCCGCTTTCCGCGTCCGCGCAGGACATTAGTGGAACGGGCCGTGC
AAAGGACGGCGACTCCCTCGACATGGCAGGGATTGCCGTCCGCTTACATGGCGTCGATGCCCCCGAGCTTTATCAGACAT
GTTCGCGGCAGGGTCAAAGCTGGGCATGTGGGAAAGAAGCGATGGCGAAATTGGGGCAATTGGTGAATGGTGCCGAATTG
CGCTGTGAGCAGCGCGATGTTGATGACTATGACCGGATCGTCGCCAGCTGCACCGCGCGGCAGATAGATCTAGGCCAAGC
CATGGTCGAAGCGGGCCTTGCAGTTGCGTTGCCTCAGTTTAGCGATCGCTATCTCGGCGCCGAGGCGCGCGCCAAGGCCC
TCAAACTAGGCATCTGGAGTTCCGACTTCCAAAAGCCAGCGGACTATCGGGCCGCCAATCCCAGGGCACATCGGCCCAAG
CCGCAGGCATCCGCCGTGCGTCAGCCTATTGCATCACCGGCGCCGTCCGGCGTCTATTACCGCAATTGCAATGCGGCATG
GGCAGCGGGTGCTGCGCCGTTATACCGCGGTCAGCCGGGATATCGGCCAGAAATGGATGGCGACGGTGACGGGGTGGCTT
GCGAGCCATTTCGGCGGCGCTGA

Upstream 100 bases:

>100_bases
CAGCCGGTCTTTGGGACGAATATTCGCATAGCGGACATTCGGCTCGATCGATCGAGGATGTTCAAGAAATTGGTAAGTTA
ACCGCGCTAGAATCCTTCCC

Downstream 100 bases:

>100_bases
GCATTTAGGCTGGGTTGAAAGGCCTTCATCCAAAGTTTCTGGCGCGGTGTTGCGACTTTGGGTAGGCCAACGACATGATG
ATGATCGGCACGAGAATCGA

Product: Excalibur

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKWLFVIALALTPLSASAQDISGTGRAKDGDSLDMAGIAVRLHGVDAPELYQTCSRQGQSWACGKEAMAKLGQLVNGAEL
RCEQRDVDDYDRIVASCTARQIDLGQAMVEAGLAVALPQFSDRYLGAEARAKALKLGIWSSDFQKPADYRAANPRAHRPK
PQASAVRQPIASPAPSGVYYRNCNAAWAAGAAPLYRGQPGYRPEMDGDGDGVACEPFRRR

Sequences:

>Translated_220_residues
MKWLFVIALALTPLSASAQDISGTGRAKDGDSLDMAGIAVRLHGVDAPELYQTCSRQGQSWACGKEAMAKLGQLVNGAEL
RCEQRDVDDYDRIVASCTARQIDLGQAMVEAGLAVALPQFSDRYLGAEARAKALKLGIWSSDFQKPADYRAANPRAHRPK
PQASAVRQPIASPAPSGVYYRNCNAAWAAGAAPLYRGQPGYRPEMDGDGDGVACEPFRRR
>Mature_220_residues
MKWLFVIALALTPLSASAQDISGTGRAKDGDSLDMAGIAVRLHGVDAPELYQTCSRQGQSWACGKEAMAKLGQLVNGAEL
RCEQRDVDDYDRIVASCTARQIDLGQAMVEAGLAVALPQFSDRYLGAEARAKALKLGIWSSDFQKPADYRAANPRAHRPK
PQASAVRQPIASPAPSGVYYRNCNAAWAAGAAPLYRGQPGYRPEMDGDGDGVACEPFRRR

Specific function: Unknown

COG id: COG1525

COG function: function code L; Micrococcal nuclease (thermonuclease) homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016071
- InterPro:   IPR006021 [H]

Pfam domain/function: PF00565 SNase [H]

EC number: NA

Molecular weight: Translated: 23669; Mature: 23669

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS50830 TNASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWLFVIALALTPLSASAQDISGTGRAKDGDSLDMAGIAVRLHGVDAPELYQTCSRQGQS
CHHHHEEHHHHCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
WACGKEAMAKLGQLVNGAELRCEQRDVDDYDRIVASCTARQIDLGQAMVEAGLAVALPQF
CCCCHHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCH
SDRYLGAEARAKALKLGIWSSDFQKPADYRAANPRAHRPKPQASAVRQPIASPAPSGVYY
HHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
RNCNAAWAAGAAPLYRGQPGYRPEMDGDGDGVACEPFRRR
ECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEECCHHCCC
>Mature Secondary Structure
MKWLFVIALALTPLSASAQDISGTGRAKDGDSLDMAGIAVRLHGVDAPELYQTCSRQGQS
CHHHHEEHHHHCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
WACGKEAMAKLGQLVNGAELRCEQRDVDDYDRIVASCTARQIDLGQAMVEAGLAVALPQF
CCCCHHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCH
SDRYLGAEARAKALKLGIWSSDFQKPADYRAANPRAHRPKPQASAVRQPIASPAPSGVYY
HHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEE
RNCNAAWAAGAAPLYRGQPGYRPEMDGDGDGVACEPFRRR
ECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8118055; 11481431 [H]