| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485628
Identifier: 103485628
GI number: 103485628
Start: 126795
End: 127478
Strand: Reverse
Name: 103485628
Synonym: Sala_0132
Alternate gene names: NA
Gene position: 127478-126795 (Counterclockwise)
Preceding gene: 103485630
Following gene: 103485627
Centisome position: 3.81
GC content: 57.31
Gene sequence:
>684_bases GTGACTCCAGTCTATAATCAATCGTTTTTGAGCGTCGCGAGTGCGGCTTTCCTGCTATCGACACTTTCGGCTTGCGGCGG CGCATCAGGGGAAGGCGAGAAATCCGACAGTGCGGAACCGCGAACGCAAGCGGCCGTCGCTCGCGACCCCAATTATCCCG AGATCGATATCCCGCCCGTTTGGGATGCCAAAGGACAGCTGGTCCAACCAAAAGACTTTCGCGAGTTGGTCTTCCTCGGG GCGCCGCTGACACCGCACGGTCTTAACGGCGGGAAAGCGTCTTTTCCCGAGTTCCACAATGTCTACACGCAGCCAGCAGC CTTCAAGGCCTATCGGGCGACCGGCAAATGGCCTGAAGGCACCATGATGATCAAGGAACTACAGCTCGTCAGTGATCCGA AAGGCGAATTTCCTGACGGATCAACGACGGCACCATCCGGGCGAGGATATTTTCCCGGTCCGCCCAATGGCCTCGACGTT TCAGTCAAGGACAGCAAACGGTTCGCCGATTCAAATGGCTGGGGCTATTTCAACTTCAATCATTCCGCTCCGCCCTATCT GGCCACGGCAGCGCTCAAATCCGTCGACGAATGCGCGGGGTGCCACATCGCCAATGCAGAAGACATGGTCTACATCAAAT TCTACAAGCCCATACTCGATCCGCTACCGCTCCCCCGCGGTTGA
Upstream 100 bases:
>100_bases TTCAAACTATTGAAACTATACCGACCGGCTATTGGACATCTCTCCCACGATGCTGGATGATCAGATACCATATATTGATT TCAAGAAGAGGACGGGTGCC
Downstream 100 bases:
>100_bases CATGACGCTGCTGCAGCCATCGGCGTCTGCGGCGCGACAGGCGATGCAAGAGCAGCGGCCATGCTCAGTGCTCATAGGAA CGACGATTTGCTGACCGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: Cytochrome P; Chain A Cytochrome P
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MTPVYNQSFLSVASAAFLLSTLSACGGASGEGEKSDSAEPRTQAAVARDPNYPEIDIPPVWDAKGQLVQPKDFRELVFLG APLTPHGLNGGKASFPEFHNVYTQPAAFKAYRATGKWPEGTMMIKELQLVSDPKGEFPDGSTTAPSGRGYFPGPPNGLDV SVKDSKRFADSNGWGYFNFNHSAPPYLATAALKSVDECAGCHIANAEDMVYIKFYKPILDPLPLPRG
Sequences:
>Translated_227_residues MTPVYNQSFLSVASAAFLLSTLSACGGASGEGEKSDSAEPRTQAAVARDPNYPEIDIPPVWDAKGQLVQPKDFRELVFLG APLTPHGLNGGKASFPEFHNVYTQPAAFKAYRATGKWPEGTMMIKELQLVSDPKGEFPDGSTTAPSGRGYFPGPPNGLDV SVKDSKRFADSNGWGYFNFNHSAPPYLATAALKSVDECAGCHIANAEDMVYIKFYKPILDPLPLPRG >Mature_226_residues TPVYNQSFLSVASAAFLLSTLSACGGASGEGEKSDSAEPRTQAAVARDPNYPEIDIPPVWDAKGQLVQPKDFRELVFLGA PLTPHGLNGGKASFPEFHNVYTQPAAFKAYRATGKWPEGTMMIKELQLVSDPKGEFPDGSTTAPSGRGYFPGPPNGLDVS VKDSKRFADSNGWGYFNFNHSAPPYLATAALKSVDECAGCHIANAEDMVYIKFYKPILDPLPLPRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24403; Mature: 24271
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPVYNQSFLSVASAAFLLSTLSACGGASGEGEKSDSAEPRTQAAVARDPNYPEIDIPPV CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC WDAKGQLVQPKDFRELVFLGAPLTPHGLNGGKASFPEFHNVYTQPAAFKAYRATGKWPEG CCCCCCEECCHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCC TMMIKELQLVSDPKGEFPDGSTTAPSGRGYFPGPPNGLDVSVKDSKRFADSNGWGYFNFN HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEC HSAPPYLATAALKSVDECAGCHIANAEDMVYIKFYKPILDPLPLPRG CCCCCHHHHHHHHHHHHHHCCEECCCCCEEEEEEEHHHHCCCCCCCC >Mature Secondary Structure TPVYNQSFLSVASAAFLLSTLSACGGASGEGEKSDSAEPRTQAAVARDPNYPEIDIPPV CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC WDAKGQLVQPKDFRELVFLGAPLTPHGLNGGKASFPEFHNVYTQPAAFKAYRATGKWPEG CCCCCCEECCHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCC TMMIKELQLVSDPKGEFPDGSTTAPSGRGYFPGPPNGLDVSVKDSKRFADSNGWGYFNFN HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEC HSAPPYLATAALKSVDECAGCHIANAEDMVYIKFYKPILDPLPLPRG CCCCCHHHHHHHHHHHHHHCCEECCCCCEEEEEEEHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA