| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485600
Identifier: 103485600
GI number: 103485600
Start: 103932
End: 104402
Strand: Reverse
Name: 103485600
Synonym: Sala_0103
Alternate gene names: NA
Gene position: 104402-103932 (Counterclockwise)
Preceding gene: 103485601
Following gene: 103485599
Centisome position: 3.12
GC content: 59.02
Gene sequence:
>471_bases ATGAGCATGCTCGAACCCCAAGCGCCGGATCTTCGGGTGCAGAAATGGATCGGCGCGGACGGAGAAAGCACCGGGCCGCT CAAGCTGTCGGATCTCGGCTCCGGCCCAAAGATCCTGTTCGCCTTCCAGCACTGGTGCCGCGGCTGCCATGTGCATGGCT TCCCGACGCTACAAAGATTGCATAGTGCATTGAGCCCCAGGGGCGTGGGATTTGCGGTGATCCAGACCGTCTTCGAAGGT GCGGATGAAAACACCTTCGAGAAGTTGCGTGTGAACCAGCTCGAATATGCGCTTCCTGTCGCCTTCGGCCATGATGAACC ACTGGTCGGCGCGACGCTGCCTACCTTCATGGAGGATTATCGCACGCGAGGAACGCCCTGGTTCTCGATCATTGACGCTG GCGGCCGTATCGTCTTCTCGGACTTCCATCTCGACGCGGACAGGATCGTAAAGGATCTGGAGCTGGTGTAA
Upstream 100 bases:
>100_bases GTCGCGGAGCACGACACCGGGGTCCGATGCGTTTGGAATGACATATCATGATAGCGCGCACCACAATTCGCCGCGGTTCT TCATCGCGCTGGAGGATCAG
Downstream 100 bases:
>100_bases TCCGTGCGGCCTTGGCTCTTCCTGACCGCCAGCCACCTCGCAATGCTCGGCATTGGTTTTGCGGCCGGCATTTACACGCT GCCAATCCTCACCGCGGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 156; Mature: 155
Protein sequence:
>156_residues MSMLEPQAPDLRVQKWIGADGESTGPLKLSDLGSGPKILFAFQHWCRGCHVHGFPTLQRLHSALSPRGVGFAVIQTVFEG ADENTFEKLRVNQLEYALPVAFGHDEPLVGATLPTFMEDYRTRGTPWFSIIDAGGRIVFSDFHLDADRIVKDLELV
Sequences:
>Translated_156_residues MSMLEPQAPDLRVQKWIGADGESTGPLKLSDLGSGPKILFAFQHWCRGCHVHGFPTLQRLHSALSPRGVGFAVIQTVFEG ADENTFEKLRVNQLEYALPVAFGHDEPLVGATLPTFMEDYRTRGTPWFSIIDAGGRIVFSDFHLDADRIVKDLELV >Mature_155_residues SMLEPQAPDLRVQKWIGADGESTGPLKLSDLGSGPKILFAFQHWCRGCHVHGFPTLQRLHSALSPRGVGFAVIQTVFEGA DENTFEKLRVNQLEYALPVAFGHDEPLVGATLPTFMEDYRTRGTPWFSIIDAGGRIVFSDFHLDADRIVKDLELV
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17337; Mature: 17206
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMLEPQAPDLRVQKWIGADGESTGPLKLSDLGSGPKILFAFQHWCRGCHVHGFPTLQRL CCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH HSALSPRGVGFAVIQTVFEGADENTFEKLRVNQLEYALPVAFGHDEPLVGATLPTFMEDY HHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHH RTRGTPWFSIIDAGGRIVFSDFHLDADRIVKDLELV HCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHCC >Mature Secondary Structure SMLEPQAPDLRVQKWIGADGESTGPLKLSDLGSGPKILFAFQHWCRGCHVHGFPTLQRL CCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH HSALSPRGVGFAVIQTVFEGADENTFEKLRVNQLEYALPVAFGHDEPLVGATLPTFMEDY HHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHH RTRGTPWFSIIDAGGRIVFSDFHLDADRIVKDLELV HCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA