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The map label for this gene is ycaD [C]

Identifier: 103485598

GI number: 103485598

Start: 102403

End: 103683

Strand: Reverse

Name: ycaD [C]

Synonym: Sala_0101

Alternate gene names: 103485598

Gene position: 103683-102403 (Counterclockwise)

Preceding gene: 103485599

Following gene: 103485589

Centisome position: 3.1

GC content: 66.04

Gene sequence:

>1281_bases
ATGAGCCCGGCGATGGATAGCATGCGGTCGGCGGGCCGACGTGGCCTCAAGCTCGCACCGGTGGCGGCGTTGCTGGCGAG
CGTCGCGGCTCTGCTGCTGGGTAATGGTTTGCTGGGCACGCTCCTGATCGTCAGGGCCGGCCAGGAGGGCTTCTCGTCCG
GCGCGATCAGCGCGATGATGTCGTTCTACTTCGCCGGTTTCACGATCGGCGCGCTCATGTTGCCGCGGATCATCGTCGCC
GTGGGTCATGTCAGAACCTTTGCCGGCTTTGCGGCGATCGCCTCGATGACTGCCCTTCTCCATGTTGCGCTCGTGGAACC
GATCGCCTGGATACCGCTTCGCCTGATCACGGGCTTCGCCTACGCGGGCATGATCCTCGCAACGGAGAGCTGGCTCAACG
CCCATGCAGTGCCATCCACGCGCGGCCAACTTCTGTCGATCTTCGGAGTCGTCTCGATGGGCTCATGGGCCATCGGCCAG
GCCTTGCTCAACGTCGCCCCGCCCGCCGACATGACCTTGTTCCTTATCGTGTCGCTGTTAATTTCCGCGGCGGTGGTTCC
GATCACCTTGCTGCCCAGCCATCCGCCGGCGCAGGTGACACAGGAACGGGTCGCGTTCAGCGACCTCGTGCGCGCATCAC
CGCTCGCTGCGGCTGGCGCTTTCCTCGCTGGCCTGGCTATCGGCGGTTTTTGGGGCATGGGCCCGAACTTCGCCCAGAGG
ATCGGACTCGATGTCGGCGGCATCTCCGCTTTCATGGCTGCGGTGCTGGGTGGGACGCTCCTATTGCAGTGGCCCCTCGG
CTGGCTTTCGGATCGCGTGTCGCGGAACCTTGTCATCGCCGCTGCGGCCCTGGCGTCCGCAGCGGCGGCCGTCGGCGTCG
CCCTCGCGGTAGGGGCGCCCCTGCCGCTGCTCCTCGCGGCGGGCGCGCTGTTCGGCGGCTTTGGCATCCCGATCTATTCA
TTGTGTCTCGCGGTTGCCAACGACGACCTTCCGGCCGGCCGGCTGCTCGGTACCGCCCGCGGGCTTCTGCTGCTCAACGG
GATCGGGACAGCCGCCGGACCCCTTATCGGGGGTGCTGCGATGACTATCGCCGGCCCCGGTGGGCTGTTCCTTTATGCGG
CCGCATTGCTTGCCATATTGGCGGTGTTGGCTATCGGGAGCAGCCAGCCAAGGCGCCGCATCCACGCCAAGGCTGCCCGC
TCTCCAAGCACACCGATGATCACGGGATCTCTTGATGTGATGATATGCATGGAGTCAGAGACGGAGGCCGCCCGGCACTA
G

Upstream 100 bases:

>100_bases
GGATCGATGTTCGCGACTACAACACGGTCGTCATCTGGTGCGAAGCGTTCGACCAGTTCATCAGCGCGGCAGCGTATCGA
CCGTCGCGTCAGGCGCTAAA

Downstream 100 bases:

>100_bases
CGCGCCTACTGCGACGGGCGTCCTATTCTACATCTTCTACGATGAGGTCCCGGCCGTTGAACTGCACGGTCTCTCCTGTT
CGTGCTCCTTCGATCGCCTC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MSPAMDSMRSAGRRGLKLAPVAALLASVAALLLGNGLLGTLLIVRAGQEGFSSGAISAMMSFYFAGFTIGALMLPRIIVA
VGHVRTFAGFAAIASMTALLHVALVEPIAWIPLRLITGFAYAGMILATESWLNAHAVPSTRGQLLSIFGVVSMGSWAIGQ
ALLNVAPPADMTLFLIVSLLISAAVVPITLLPSHPPAQVTQERVAFSDLVRASPLAAAGAFLAGLAIGGFWGMGPNFAQR
IGLDVGGISAFMAAVLGGTLLLQWPLGWLSDRVSRNLVIAAAALASAAAAVGVALAVGAPLPLLLAAGALFGGFGIPIYS
LCLAVANDDLPAGRLLGTARGLLLLNGIGTAAGPLIGGAAMTIAGPGGLFLYAAALLAILAVLAIGSSQPRRRIHAKAAR
SPSTPMITGSLDVMICMESETEAARH

Sequences:

>Translated_426_residues
MSPAMDSMRSAGRRGLKLAPVAALLASVAALLLGNGLLGTLLIVRAGQEGFSSGAISAMMSFYFAGFTIGALMLPRIIVA
VGHVRTFAGFAAIASMTALLHVALVEPIAWIPLRLITGFAYAGMILATESWLNAHAVPSTRGQLLSIFGVVSMGSWAIGQ
ALLNVAPPADMTLFLIVSLLISAAVVPITLLPSHPPAQVTQERVAFSDLVRASPLAAAGAFLAGLAIGGFWGMGPNFAQR
IGLDVGGISAFMAAVLGGTLLLQWPLGWLSDRVSRNLVIAAAALASAAAAVGVALAVGAPLPLLLAAGALFGGFGIPIYS
LCLAVANDDLPAGRLLGTARGLLLLNGIGTAAGPLIGGAAMTIAGPGGLFLYAAALLAILAVLAIGSSQPRRRIHAKAAR
SPSTPMITGSLDVMICMESETEAARH
>Mature_425_residues
SPAMDSMRSAGRRGLKLAPVAALLASVAALLLGNGLLGTLLIVRAGQEGFSSGAISAMMSFYFAGFTIGALMLPRIIVAV
GHVRTFAGFAAIASMTALLHVALVEPIAWIPLRLITGFAYAGMILATESWLNAHAVPSTRGQLLSIFGVVSMGSWAIGQA
LLNVAPPADMTLFLIVSLLISAAVVPITLLPSHPPAQVTQERVAFSDLVRASPLAAAGAFLAGLAIGGFWGMGPNFAQRI
GLDVGGISAFMAAVLGGTLLLQWPLGWLSDRVSRNLVIAAAALASAAAAVGVALAVGAPLPLLLAAGALFGGFGIPIYSL
CLAVANDDLPAGRLLGTARGLLLLNGIGTAAGPLIGGAAMTIAGPGGLFLYAAALLAILAVLAIGSSQPRRRIHAKAARS
PSTPMITGSLDVMICMESETEAARH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=328, Percent_Identity=23.4756097560976, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43117; Mature: 42986

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAMDSMRSAGRRGLKLAPVAALLASVAALLLGNGLLGTLLIVRAGQEGFSSGAISAMM
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHH
SFYFAGFTIGALMLPRIIVAVGHVRTFAGFAAIASMTALLHVALVEPIAWIPLRLITGFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAGMILATESWLNAHAVPSTRGQLLSIFGVVSMGSWAIGQALLNVAPPADMTLFLIVSLL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHH
ISAAVVPITLLPSHPPAQVTQERVAFSDLVRASPLAAAGAFLAGLAIGGFWGMGPNFAQR
HHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHH
IGLDVGGISAFMAAVLGGTLLLQWPLGWLSDRVSRNLVIAAAALASAAAAVGVALAVGAP
HCCCCCHHHHHHHHHHCCHHEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
LPLLLAAGALFGGFGIPIYSLCLAVANDDLPAGRLLGTARGLLLLNGIGTAAGPLIGGAA
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHEEECCCHHHHHHHCCCE
MTIAGPGGLFLYAAALLAILAVLAIGSSQPRRRIHAKAARSPSTPMITGSLDVMICMESE
EEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCEEEEEECCC
TEAARH
HHHCCC
>Mature Secondary Structure 
SPAMDSMRSAGRRGLKLAPVAALLASVAALLLGNGLLGTLLIVRAGQEGFSSGAISAMM
CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHH
SFYFAGFTIGALMLPRIIVAVGHVRTFAGFAAIASMTALLHVALVEPIAWIPLRLITGFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAGMILATESWLNAHAVPSTRGQLLSIFGVVSMGSWAIGQALLNVAPPADMTLFLIVSLL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHH
ISAAVVPITLLPSHPPAQVTQERVAFSDLVRASPLAAAGAFLAGLAIGGFWGMGPNFAQR
HHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHH
IGLDVGGISAFMAAVLGGTLLLQWPLGWLSDRVSRNLVIAAAALASAAAAVGVALAVGAP
HCCCCCHHHHHHHHHHCCHHEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
LPLLLAAGALFGGFGIPIYSLCLAVANDDLPAGRLLGTARGLLLLNGIGTAAGPLIGGAA
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHEEECCCHHHHHHHCCCE
MTIAGPGGLFLYAAALLAILAVLAIGSSQPRRRIHAKAARSPSTPMITGSLDVMICMESE
EEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCEEEEEECCC
TEAARH
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA