| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485554
Identifier: 103485554
GI number: 103485554
Start: 62186
End: 62770
Strand: Reverse
Name: 103485554
Synonym: Sala_0056
Alternate gene names: NA
Gene position: 62770-62186 (Counterclockwise)
Preceding gene: 103485555
Following gene: 103485553
Centisome position: 1.88
GC content: 60.68
Gene sequence:
>585_bases ATGAAAAATATCAATCCAAACCTCGGCAGACTGGCCGAAGACTATATCGTCAGCGGCGCCTGGGACCCCGAACTAGTGGA CAAGCTCGGTCCGGACGAACTCGATCAATTGTTCAGCCATTTGACGGCCCGTGCCGCGGTTGAGACGGCGGCCGCCACAC TTGAGCCCGAGTCCCTCGAACTCGATGAGGACGCACAAGCGGCAGTATTGAGGCTCCAGAGTTTCTATCTGGGCGAAGTT GCACGCGTCCGAACCGCCAAGCCCGACGCGGCGGCGATGCTCCTGAAGCCGGCAACCTGGTTGGCGATCGAGCCAGTCTT GCGCGACCGCGATTTCCTCATCCGGTTGGCGCAGCGCCGCTTGCGTGGGATGCAGTCGCGTTGCACGCAGGATATTGCGG ATCTGCTCGGTTATTCGCGTAGAGCGGTGGCGGACTTTTTCAGAGGCGAGGCGGGCGAGGGCCTGACACTTGCGGAGAAC CGTAACACCGGAAAGCCCGATGATGGTGGAGACGAGGAGTTTTCCACCGCGCTGGCGCGCTCAGATATTCCCGAGGCGTT CAAGCGGAGATGGAGGGAAGAGTAA
Upstream 100 bases:
>100_bases ATGACCTCGTCCGGCTGACCGGAATCCCGCGCAGCACATTGGCCAATCTCAAGACTGAATTCGGGCGCATGCTCAAATCG GCGCTCGCGGAGAAGACGTC
Downstream 100 bases:
>100_bases GCAGGTGGCGGCGTTCGACCTTGCTCGGCTTCATGCACGCGCGCTTCGCGAAGCCAAGATCGCCGGGCGTGCGACCGGAC CCGCTGCCGTCAAATCGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MKNINPNLGRLAEDYIVSGAWDPELVDKLGPDELDQLFSHLTARAAVETAAATLEPESLELDEDAQAAVLRLQSFYLGEV ARVRTAKPDAAAMLLKPATWLAIEPVLRDRDFLIRLAQRRLRGMQSRCTQDIADLLGYSRRAVADFFRGEAGEGLTLAEN RNTGKPDDGGDEEFSTALARSDIPEAFKRRWREE
Sequences:
>Translated_194_residues MKNINPNLGRLAEDYIVSGAWDPELVDKLGPDELDQLFSHLTARAAVETAAATLEPESLELDEDAQAAVLRLQSFYLGEV ARVRTAKPDAAAMLLKPATWLAIEPVLRDRDFLIRLAQRRLRGMQSRCTQDIADLLGYSRRAVADFFRGEAGEGLTLAEN RNTGKPDDGGDEEFSTALARSDIPEAFKRRWREE >Mature_194_residues MKNINPNLGRLAEDYIVSGAWDPELVDKLGPDELDQLFSHLTARAAVETAAATLEPESLELDEDAQAAVLRLQSFYLGEV ARVRTAKPDAAAMLLKPATWLAIEPVLRDRDFLIRLAQRRLRGMQSRCTQDIADLLGYSRRAVADFFRGEAGEGLTLAEN RNTGKPDDGGDEEFSTALARSDIPEAFKRRWREE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21629; Mature: 21629
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNINPNLGRLAEDYIVSGAWDPELVDKLGPDELDQLFSHLTARAAVETAAATLEPESLE CCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LDEDAQAAVLRLQSFYLGEVARVRTAKPDAAAMLLKPATWLAIEPVLRDRDFLIRLAQRR CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LRGMQSRCTQDIADLLGYSRRAVADFFRGEAGEGLTLAENRNTGKPDDGGDEEFSTALAR HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH SDIPEAFKRRWREE CCCHHHHHHHHCCC >Mature Secondary Structure MKNINPNLGRLAEDYIVSGAWDPELVDKLGPDELDQLFSHLTARAAVETAAATLEPESLE CCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC LDEDAQAAVLRLQSFYLGEVARVRTAKPDAAAMLLKPATWLAIEPVLRDRDFLIRLAQRR CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LRGMQSRCTQDIADLLGYSRRAVADFFRGEAGEGLTLAENRNTGKPDDGGDEEFSTALAR HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHH SDIPEAFKRRWREE CCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA