| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485536
Identifier: 103485536
GI number: 103485536
Start: 38833
End: 39786
Strand: Direct
Name: 103485536
Synonym: Sala_0038
Alternate gene names: NA
Gene position: 38833-39786 (Clockwise)
Preceding gene: 103485535
Following gene: 103485542
Centisome position: 1.16
GC content: 66.88
Gene sequence:
>954_bases ATGATCCGATCGCTCCTTCGTCGGCCGCTGCTGCCGCTGCTCGCTCTTCCATTGCTGCTCGCACCGGCGCCGTTGCCTGC GCAAAGTGGCGGCGCGCCCTATCACGTCGATGGTCGTGGTTTTACGCGCCTTCAGGACGCCGTCGATGCGATCGGCGAGG GCGAGGGGACGATCCGCATCGCGGCCGGCTATCATCGCGACTGCGCCGTACAGACCGCGGGCCGCATCGCCTTTGTCGCG TCCGAACCCGGACGCGCGATCTTCGATGGCGTGACGTGCGAGGGCAAGGCGGCGCTGGTGCTGCGGGGGCAGGGCGCGCG CGTCGACGGCCTTGTGTTCCAGAATATGCGCGTCCCCGACGGCAATGGTGCGGGCATCCGGCTGGAGACGAGCGACCTTG ACGTCGTGAACGCGATGTTCCGCAACAGCGAACAGGGCATTTTGACCGCCGACGATCCCGAGGCGGCGTTGACCATCGAC CGCTCGACCTTTTCGCGGCTCGGCCGCTGCGATCGCGGCCTCAGCTGCGCGCACAGCGTCTACACCGGCCTCTATGGCCG CGTGACCGTCACCCGCGCCCGCTTTGAAAAGGGCAGCGGCGGCCATTATCTGAAAACGCGCGCGGCCCGCGTCGATGTGA GCGACAACAGCTTCGACGACACGCAGGGCACCGGCACCAATTATATGATCGACCTGCCATCCGGTTCGACCGGGCGGATT ATAGGCAATCTGTTCGTGCAGGGGCGCGACAAGGAAAATTATTCGGCCTTCATCGCGGTCGCGGCCGAAGAGCGCAAGAA TCCGTCGCGCGGCCTCGTCATCGAAGGCAATCGCGCCAGCCTGCCCGCGGGGATGGGCCGCCGATCGGTGTTTGTCGCCG ACTGGAGCGGCGAGGCGCTGGCGATCGGCGCGAACGAGCTGGGCGCGGGGCTGGCGCGTTTCGAAAAGCGGTAG
Upstream 100 bases:
>100_bases CCATTAATTCCGATCGGCGCGCCTGTCCGAAAGCGAGACAGGCGTGCCGTTAACCAGCTTCGCGAACGACCGCCGTGCCG AAGGGCGCTATACGGCACGC
Downstream 100 bases:
>100_bases GCTTATGCCTCGCCGCGCGTTTCGATCAGCGAGGCGGCGAGCGCTTCTGCGGGGGTCTTGCCGCCCCACAGCACGAACTG AAACACCGGATAAAAGCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MIRSLLRRPLLPLLALPLLLAPAPLPAQSGGAPYHVDGRGFTRLQDAVDAIGEGEGTIRIAAGYHRDCAVQTAGRIAFVA SEPGRAIFDGVTCEGKAALVLRGQGARVDGLVFQNMRVPDGNGAGIRLETSDLDVVNAMFRNSEQGILTADDPEAALTID RSTFSRLGRCDRGLSCAHSVYTGLYGRVTVTRARFEKGSGGHYLKTRAARVDVSDNSFDDTQGTGTNYMIDLPSGSTGRI IGNLFVQGRDKENYSAFIAVAAEERKNPSRGLVIEGNRASLPAGMGRRSVFVADWSGEALAIGANELGAGLARFEKR
Sequences:
>Translated_317_residues MIRSLLRRPLLPLLALPLLLAPAPLPAQSGGAPYHVDGRGFTRLQDAVDAIGEGEGTIRIAAGYHRDCAVQTAGRIAFVA SEPGRAIFDGVTCEGKAALVLRGQGARVDGLVFQNMRVPDGNGAGIRLETSDLDVVNAMFRNSEQGILTADDPEAALTID RSTFSRLGRCDRGLSCAHSVYTGLYGRVTVTRARFEKGSGGHYLKTRAARVDVSDNSFDDTQGTGTNYMIDLPSGSTGRI IGNLFVQGRDKENYSAFIAVAAEERKNPSRGLVIEGNRASLPAGMGRRSVFVADWSGEALAIGANELGAGLARFEKR >Mature_317_residues MIRSLLRRPLLPLLALPLLLAPAPLPAQSGGAPYHVDGRGFTRLQDAVDAIGEGEGTIRIAAGYHRDCAVQTAGRIAFVA SEPGRAIFDGVTCEGKAALVLRGQGARVDGLVFQNMRVPDGNGAGIRLETSDLDVVNAMFRNSEQGILTADDPEAALTID RSTFSRLGRCDRGLSCAHSVYTGLYGRVTVTRARFEKGSGGHYLKTRAARVDVSDNSFDDTQGTGTNYMIDLPSGSTGRI IGNLFVQGRDKENYSAFIAVAAEERKNPSRGLVIEGNRASLPAGMGRRSVFVADWSGEALAIGANELGAGLARFEKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33708; Mature: 33708
Theoretical pI: Translated: 8.61; Mature: 8.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRSLLRRPLLPLLALPLLLAPAPLPAQSGGAPYHVDGRGFTRLQDAVDAIGEGEGTIRI CCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEE AAGYHRDCAVQTAGRIAFVASEPGRAIFDGVTCEGKAALVLRGQGARVDGLVFQNMRVPD EECCCCCEEEECCCEEEEEECCCCCEEECCEECCCCEEEEEECCCCCCCEEEEECEECCC GNGAGIRLETSDLDVVNAMFRNSEQGILTADDPEAALTIDRSTFSRLGRCDRGLSCAHSV CCCCEEEEECCCCHHHHHHHCCCCCCEEEECCCCEEEEEEHHHHHHHHCCCCCHHHHHHH YTGLYGRVTVTRARFEKGSGGHYLKTRAARVDVSDNSFDDTQGTGTNYMIDLPSGSTGRI HHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEE IGNLFVQGRDKENYSAFIAVAAEERKNPSRGLVIEGNRASLPAGMGRRSVFVADWSGEAL EEEEEEECCCCCCCEEEEEEEEHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEE AIGANELGAGLARFEKR EECCHHHHHHHHHHCCC >Mature Secondary Structure MIRSLLRRPLLPLLALPLLLAPAPLPAQSGGAPYHVDGRGFTRLQDAVDAIGEGEGTIRI CCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEE AAGYHRDCAVQTAGRIAFVASEPGRAIFDGVTCEGKAALVLRGQGARVDGLVFQNMRVPD EECCCCCEEEECCCEEEEEECCCCCEEECCEECCCCEEEEEECCCCCCCEEEEECEECCC GNGAGIRLETSDLDVVNAMFRNSEQGILTADDPEAALTIDRSTFSRLGRCDRGLSCAHSV CCCCEEEEECCCCHHHHHHHCCCCCCEEEECCCCEEEEEEHHHHHHHHCCCCCHHHHHHH YTGLYGRVTVTRARFEKGSGGHYLKTRAARVDVSDNSFDDTQGTGTNYMIDLPSGSTGRI HHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEE IGNLFVQGRDKENYSAFIAVAAEERKNPSRGLVIEGNRASLPAGMGRRSVFVADWSGEAL EEEEEEECCCCCCCEEEEEEEEHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEE AIGANELGAGLARFEKR EECCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA