| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103485509
Identifier: 103485509
GI number: 103485509
Start: 8689
End: 9192
Strand: Reverse
Name: 103485509
Synonym: Sala_0011
Alternate gene names: NA
Gene position: 9192-8689 (Counterclockwise)
Preceding gene: 103485510
Following gene: 103485508
Centisome position: 0.27
GC content: 65.08
Gene sequence:
>504_bases ATGATGAGCAAGCCCCCCCTGACCCTATGCCTCTGGTACGAAGGCGACGCCGAGGAAGCGGCCAGTTTCTATGCCGAAAC CTTTGCCGACAGCCATGTGGGCGCCGTCCACCGCGCACCCGGCGACACGCCGGGCGGCAAGGAAGGCGATGTGCTGACCG TCGAGTTCACGCTGCTCGGCACGCCGTGCCTCGGCCTCAACGGCCCACCGATCTTCAAGCATAGCGAGGCCTTTTCCTTC ATCGTCCACACCGACACGCAGGAGGAAACCGACCGGCTGTGGGACGCGATTGTCGGCAATGGCGGGCAGGAAAGCATGTG CGGCTGGTGCAAGGACAAATGGGGCGTGAGCTGGCAGATTACCCCGCGCGTCCTGATCGAAGCGACGACGAGCAGCGACA AGGCCGCCGCCAAGCGCGCGTTCGAGGCGATGATGACGATGAAAAAGATCGACATCGCGGCGATCGAGGCCGCGGTGCGG GGCGAAGCCGTTGGCGCGGCGTAG
Upstream 100 bases:
>100_bases ATGCGATGAACGCCATCGACCCGCAGGGCGCGGCGATCGGCTTTGTTGGGCCGCGCAAAGGCTGACCCCCCATACCCCCC AGGCAATATGAAGGAGAGTG
Downstream 100 bases:
>100_bases TCCCGCGCTCTTCGCCTGGGCGCTCTGTGGCACGCTCGACATCGTCTATGCGGCGGTATCGAGCGTACTTCAGGGCGGCA CCGTGCCGGGCATGTTGCGC
Product: 3-demethylubiquinone-9 3-methyltransferase
Products: NA
Alternate protein names: 3-Demethylubiquinone-9 3-Methyltransferase Family Protein; 3-Demethylubiquinone-9 3-Methyltransferase Domain Protein; Methyltransferase; Signal Peptide; 3-Demethylubiquinone-93- Methyltransferase Protein; 3-Demethylubiquinone-9 3-O-Methyltransferase; 3-Demethylubiquinone-9 3-Methyltransferase Family
Number of amino acids: Translated: 167; Mature: 167
Protein sequence:
>167_residues MMSKPPLTLCLWYEGDAEEAASFYAETFADSHVGAVHRAPGDTPGGKEGDVLTVEFTLLGTPCLGLNGPPIFKHSEAFSF IVHTDTQEETDRLWDAIVGNGGQESMCGWCKDKWGVSWQITPRVLIEATTSSDKAAAKRAFEAMMTMKKIDIAAIEAAVR GEAVGAA
Sequences:
>Translated_167_residues MMSKPPLTLCLWYEGDAEEAASFYAETFADSHVGAVHRAPGDTPGGKEGDVLTVEFTLLGTPCLGLNGPPIFKHSEAFSF IVHTDTQEETDRLWDAIVGNGGQESMCGWCKDKWGVSWQITPRVLIEATTSSDKAAAKRAFEAMMTMKKIDIAAIEAAVR GEAVGAA >Mature_167_residues MMSKPPLTLCLWYEGDAEEAASFYAETFADSHVGAVHRAPGDTPGGKEGDVLTVEFTLLGTPCLGLNGPPIFKHSEAFSF IVHTDTQEETDRLWDAIVGNGGQESMCGWCKDKWGVSWQITPRVLIEATTSSDKAAAKRAFEAMMTMKKIDIAAIEAAVR GEAVGAA
Specific function: Unknown
COG id: COG3865
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17939; Mature: 17939
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSKPPLTLCLWYEGDAEEAASFYAETFADSHVGAVHRAPGDTPGGKEGDVLTVEFTLLG CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEC TPCLGLNGPPIFKHSEAFSFIVHTDTQEETDRLWDAIVGNGGQESMCGWCKDKWGVSWQI CCCCCCCCCCCEECCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEE TPRVLIEATTSSDKAAAKRAFEAMMTMKKIDIAAIEAAVRGEAVGAA CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MMSKPPLTLCLWYEGDAEEAASFYAETFADSHVGAVHRAPGDTPGGKEGDVLTVEFTLLG CCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEC TPCLGLNGPPIFKHSEAFSFIVHTDTQEETDRLWDAIVGNGGQESMCGWCKDKWGVSWQI CCCCCCCCCCCEECCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEE TPRVLIEATTSSDKAAAKRAFEAMMTMKKIDIAAIEAAVRGEAVGAA CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA