Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082852

Identifier: 99082852

GI number: 99082852

Start: 3180522

End: 3181370

Strand: Direct

Name: 99082852

Synonym: TM1040_3012

Alternate gene names: NA

Gene position: 3180522-3181370 (Clockwise)

Preceding gene: 99082847

Following gene: 99082856

Centisome position: 99.36

GC content: 59.01

Gene sequence:

>849_bases
ATGAGTGACGACCGTAAGAGCCGCTTTCCCGATGCCCGCGCTGATCGATACCGCGCCGAACATGTTCCCGTGACGCCACA
AACGCAGTCGCCTGTCTACCAGCTTGCTTTTGCCGATGAAGGGTTTCTGTGCCGAGAAGAACTGCGTCCGGTGCGCTTGC
AGCTGGAGCTTCTGAAGCCGCAGCTGATGCTGGACGAAAAAGGCGTCGAGAGCACGGTCGTGATGTTTGGCGGGGCGCGC
ATCCCCGCCCCGCGTGACAAGGACAAGGCGCGGACACAGACCCTGGCCGACCTTAGTCATTTCTACGACGAAGCGCGTAC
GTTCGCGCAGAAGATGACCGAAAAATCCAAGGCAAGTGGCGGTCGGCGTCATGTCGTCGTGACCGGTGGCGGTCCCGGTG
TCATGGAAGCTGGAAACCGGGGCGCCGTGGATGCGGGCGGCGAGTCGATTGGCCTCAATATCGTGTTGCCGCACGAACAG
GCGCCCAACGAATACGTCACGCCGGAGCTCTGTTTCAATTTCCACTATTTTGCGATCCGCAAGATGCATTTCCTGATGCG
TGCTGAGGCGATTTGCGTTTTCCCTGGTGGCTTTGGCACCCTTGATGAGCTGTTTGAGGCCCTGACGCTGATCCAGACCG
GGCGCATGGAACCTGTCCCATTCTTGCTGTTTGGCCGCAGTTTCTGGGAGAAGATCATCAATTGGGAGGCCCTGGCCGAC
GCGGGAACAATTTCAGACCAGGACCTTGATCTGTTCAAGTTCGTGGAAAGCGCGGATGAGGCAATCGCAGCGATCGAGGC
GTGGAACCCTGTACCTGCGCGTCAAAACCTGCCCGGTCGTGATCGTTAG

Upstream 100 bases:

>100_bases
GCAAGGGGATTGATGGTGCGATTTGAGCACTGGCCGCAAAGGGGTGCGCAGGCTATGACAGGGTCTAACCTTCTGCACTG
AAGAATAGGCAAGATTTGAT

Downstream 100 bases:

>100_bases
GACCCGCGCAGAGATCGTTTTCTTACCTCGGCATGCTTTAAACGGTAGCGCGTCGGGCCCCTTGGGCCCGGCGCGCGGGT
CCGCCCGACAGGACGGAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKPQLMLDEKGVESTVVMFGGAR
IPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASGGRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQ
APNEYVTPELCFNFHYFAIRKMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALAD
AGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR

Sequences:

>Translated_282_residues
MSDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKPQLMLDEKGVESTVVMFGGAR
IPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASGGRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQ
APNEYVTPELCFNFHYFAIRKMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALAD
AGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR
>Mature_281_residues
SDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKPQLMLDEKGVESTVVMFGGARI
PAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASGGRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQA
PNEYVTPELCFNFHYFAIRKMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALADA
GTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31514; Mature: 31383

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKP
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEHHHCCCCEEHHHHHCC
QLMLDEKGVESTVVMFGGARIPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASG
HHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQAPNEYVTPELCFNFHYFAIR
CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
KMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALAD
HHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHC
AGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDDRKSRFPDARADRYRAEHVPVTPQTQSPVYQLAFADEGFLCREELRPVRLQLELLKP
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEHHHCCCCEEHHHHHCC
QLMLDEKGVESTVVMFGGARIPAPRDKDKARTQTLADLSHFYDEARTFAQKMTEKSKASG
HHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GRRHVVVTGGGPGVMEAGNRGAVDAGGESIGLNIVLPHEQAPNEYVTPELCFNFHYFAIR
CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
KMHFLMRAEAICVFPGGFGTLDELFEALTLIQTGRMEPVPFLLFGRSFWEKIINWEALAD
HHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHC
AGTISDQDLDLFKFVESADEAIAAIEAWNPVPARQNLPGRDR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA