Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99082792

Identifier: 99082792

GI number: 99082792

Start: 3120174

End: 3122588

Strand: Direct

Name: 99082792

Synonym: TM1040_2952

Alternate gene names: NA

Gene position: 3120174-3122588 (Clockwise)

Preceding gene: 99082791

Following gene: 99082793

Centisome position: 97.48

GC content: 56.6

Gene sequence:

>2415_bases
ATGATATCGCGAGCAATCGCATTTGCGGCTGCAGTAGTGGTCGCTGGATATGCAGAAGCACAAACAATCGTAACACGCTC
GGGAGAGCACGACACATTCACCCGCTTGGTGATGCGTCTACCCGACGGTATCGAGTGGTCACTGACCCAAAATGAAAACG
TCGCGACCGTCAATGTTGGGTCTCCGACAGCTGTCTTTAACACGCAATCCGTATTCGATCTCATTCCCCGTACCCGCATT
CGCTCCGTGAGCCAGGCTGCCCCAGGTCAACCACTGCGCATTGATCTCGGGTGTGAGTGTAGCGTCGATTATTACCAGCA
GTCCGATGGCTACTTGGTGATCGACGTGCGCGAGGGGCGCTCGCTGACTCTGGCAGAACCGTCCGATCGTGCAAGCCTGC
CGCTTACTTTTCCGAGCGCTCGCGCAGGGCGTGACTTCAACATTGACTCGCGTGATCTGGCCAGTGCGCGCGTTGCAATG
GGTCTTGAAGATGCAGTTGAGCAGACATTCGGATCCGCGAAGCGACAACCGCTCCATACGGGTCCGGTAGAGATCCCTTT
GCTCGGTGATGAAACTGGTATTGCGCCTGCGCAAAAGGCCGAAGATGTCGCCGTGCCGGACACCAAAGACGACGATGACA
AGCCTTCGCCTGAGACACTGACTGCAGATTCAAGTCTGCTCATGGATCTTGAGGAGAATCGTCGCGCGGCGTTGGTCAAC
GATACCGAGACACGGTTGCTACAACAAATCGGGCGTGCCAGCGATCAGGGTCTTCTCAACCCGAATGAACAGGGCCAAGC
GGCGCTTCAACTCGACCCTTTGGGGAACGAGAATAGGCCTCTCAATCCTCTGGACAATATGTCCGTTACATCTGCAATTG
ATCGTGAAACAGGTCTTTTTGCAGTATCCAATGGTCGTGATGAAGCGGCATCTCATTGTATTCCAGACCTTGAAATAGCG
GTTTACAAATGGGGTAAGGAAACACCATTTGCAGAGCAGATTGGCGCCTTGAGAAACGAAATTCTCGGTGAGTTCGATCA
ACTCAATCGCGATGCGACCCTGAAACTCGCGAGGACATACCTCTATTTTGGCTTTGGCGCGGAGGCGGTTTCGACGCTTC
ACATGCTCTCCGAGAGCAATCTCAAGCCGCGCTCGCGTGAGATCATGACGACAATTGCGCAGATCCTCGATGGGGAAGAA
CTTCCTGTAAATACGATTTTTTCCGGCCAGCAAACCTGTAGTGGCGGCGCGGCCTTCTGGGCTGCGATGGCGGACGGCGT
CGTTAAAAAGGGGGCAAACTCTGACGCAATTCAGCAGACCTTCGCACGTTTGCCCGCGCATCTGCGTGTCCAACTTGGTG
CGCGCATGACCAGGCTCTTTGCTGAAGCCGGAGACCCAAGCGTTGCAAAAGCGACCTTGCGGTCTGTTGATCGCACCGGG
GTCGAAGGGGTGCCGGATCGCAACCTGGCAGAGGCGGCAATTGCGGAGCTTGACGGTGACACGGATGCGGTGGCTCGCAA
CCTCACAGAAGAAGTTGCGGAGCAAAGCCAAAACACCCCGCTCGCGCTCATCGAACTTGTCGAATTGAGTTATGCGGAAC
GTCGGGCGCTTTCCCCGGATGTTCCGGATCTGACGGCCTCCTACGAGCTTGAGTACCGAGACGCCGCATTGGGTGCAGAA
CTGCGAAAAGCCGAAGTTATGGCGTTGGCGCTGACCGGTAGTTTTGACGCGGCATTCAAAAAGAGTGCCAAGCTTGAAGA
GCGCGATGGGCTCATGGCGCGAGATTCTGTAAATACCCCGCTGATGACACTGCTTACTGAGAACGCGGATGACGTGACCT
TCTTGAAGTACGCTCTGATCTTTGCTCACGAGGCAGGTGCGACGCGTGCGGGCCAGGTTGGGGACATCATTGCGCGCCGG
TTGCTTGATCTGGGTTTTGCAGAGCAGGCGGAGATGATCCTGCGCAAAATGAGCCTCGAACCTCAAAATGAAGACCGCCG
CATGATGAGTGCAGAGGCGCATCTGCAATTGGACCAACCCCAACGCGCCCTGGTGGAACTGATGGGGCTCGAAGGTCAGC
AGGCTGATCGCATGCGCGCAGAGGCGCTTTGGCGCAACAAGGAATATGAACGCGCAAGCGAATACATGATGTCGGCGCAA
GACCTGGACGGTGCCGCACGGGGGTTCTGGCTGTCCGAGGATCTGGAAGCTGTGGAGGCCATCAGTGAGGACGCAGCTCC
GTTTCGGTCTGTGGCCGAGGTGACCAAGCAGATCGATTCCGCTGTGCGTGAGCCCGAAGGCTTGCCGCCTTTGGCCGAAG
CGCGCGCGCTGGTAGAGAGCAGTGTCGGCGCAAGATCTTCGATTGAGGAGCTGTTGCGCAAAGTGGAGCGCACGCCAGAT
GAAGTCGAGGATTGA

Upstream 100 bases:

>100_bases
CGATTTGTATTGAGGTGGGGCGTCAGAACACGCCATCCCACATTCGGCCCGGGTTCTCCGAGCTGGAGGAAGCTTTGAAC
GAAGTGAAACAGGGCGCAGC

Downstream 100 bases:

>100_bases
CCTACAACGGACTTGGTTTCGCGACAGAATACGAATGGCCGCGCTCTCTGAGTTCGGCCATTTCGCTTTGCACTGATAAC
ACTTTTTAAAGCATAGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 804; Mature: 804

Protein sequence:

>804_residues
MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVGSPTAVFNTQSVFDLIPRTRI
RSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGRSLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAM
GLEDAVEQTFGSAKRQPLHTGPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN
DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLFAVSNGRDEAASHCIPDLEIA
VYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTYLYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEE
LPVNTIFSGQQTCSGGAAFWAAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG
VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPDVPDLTASYELEYRDAALGAE
LRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTPLMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARR
LLDLGFAEQAEMILRKMSLEPQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ
DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVESSVGARSSIEELLRKVERTPD
EVED

Sequences:

>Translated_804_residues
MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVGSPTAVFNTQSVFDLIPRTRI
RSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGRSLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAM
GLEDAVEQTFGSAKRQPLHTGPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN
DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLFAVSNGRDEAASHCIPDLEIA
VYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTYLYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEE
LPVNTIFSGQQTCSGGAAFWAAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG
VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPDVPDLTASYELEYRDAALGAE
LRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTPLMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARR
LLDLGFAEQAEMILRKMSLEPQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ
DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVESSVGARSSIEELLRKVERTPD
EVED
>Mature_804_residues
MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVGSPTAVFNTQSVFDLIPRTRI
RSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGRSLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAM
GLEDAVEQTFGSAKRQPLHTGPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN
DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLFAVSNGRDEAASHCIPDLEIA
VYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTYLYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEE
LPVNTIFSGQQTCSGGAAFWAAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG
VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPDVPDLTASYELEYRDAALGAE
LRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTPLMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARR
LLDLGFAEQAEMILRKMSLEPQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ
DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVESSVGARSSIEELLRKVERTPD
EVED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87578; Mature: 87578

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVG
CCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEECC
SPTAVFNTQSVFDLIPRTRIRSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGR
CCCEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHEECCCCEEEEEECCCC
SLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAMGLEDAVEQTFGSAKRQPLHT
EEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
GPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN
CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHEEEHHCCCCEEEEC
DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLF
CHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEE
AVSNGRDEAASHCIPDLEIAVYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTY
EECCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEELPVNTIFSGQQTCSGGAAFW
HHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHH
AAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG
HHHHHHHHHCCCCHHHHHHHHHHCCHHEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPD
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
VPDLTASYELEYRDAALGAELRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTP
CCCCCCCEEEEHHHHHHHHHHHHHEEEEEEEECCCHHHHHHCCCCHHHCCCEECCCCCCC
LMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARRLLDLGFAEQAEMILRKMSLE
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
PQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ
CCCHHHHHHHHHHHEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVES
HCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SVGARSSIEELLRKVERTPDEVED
HCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MISRAIAFAAAVVVAGYAEAQTIVTRSGEHDTFTRLVMRLPDGIEWSLTQNENVATVNVG
CCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCEEEEECCCCEEEEECC
SPTAVFNTQSVFDLIPRTRIRSVSQAAPGQPLRIDLGCECSVDYYQQSDGYLVIDVREGR
CCCEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHEECCCCEEEEEECCCC
SLTLAEPSDRASLPLTFPSARAGRDFNIDSRDLASARVAMGLEDAVEQTFGSAKRQPLHT
EEEEECCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
GPVEIPLLGDETGIAPAQKAEDVAVPDTKDDDDKPSPETLTADSSLLMDLEENRRAALVN
CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHEEEHHCCCCEEEEC
DTETRLLQQIGRASDQGLLNPNEQGQAALQLDPLGNENRPLNPLDNMSVTSAIDRETGLF
CHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEE
AVSNGRDEAASHCIPDLEIAVYKWGKETPFAEQIGALRNEILGEFDQLNRDATLKLARTY
EECCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LYFGFGAEAVSTLHMLSESNLKPRSREIMTTIAQILDGEELPVNTIFSGQQTCSGGAAFW
HHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHH
AAMADGVVKKGANSDAIQQTFARLPAHLRVQLGARMTRLFAEAGDPSVAKATLRSVDRTG
HHHHHHHHHCCCCHHHHHHHHHHCCHHEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
VEGVPDRNLAEAAIAELDGDTDAVARNLTEEVAEQSQNTPLALIELVELSYAERRALSPD
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
VPDLTASYELEYRDAALGAELRKAEVMALALTGSFDAAFKKSAKLEERDGLMARDSVNTP
CCCCCCCEEEEHHHHHHHHHHHHHEEEEEEEECCCHHHHHHCCCCHHHCCCEECCCCCCC
LMTLLTENADDVTFLKYALIFAHEAGATRAGQVGDIIARRLLDLGFAEQAEMILRKMSLE
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
PQNEDRRMMSAEAHLQLDQPQRALVELMGLEGQQADRMRAEALWRNKEYERASEYMMSAQ
CCCHHHHHHHHHHHEECCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
DLDGAARGFWLSEDLEAVEAISEDAAPFRSVAEVTKQIDSAVREPEGLPPLAEARALVES
HCCCHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SVGARSSIEELLRKVERTPDEVED
HCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA