| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082790
Identifier: 99082790
GI number: 99082790
Start: 3118616
End: 3119233
Strand: Direct
Name: 99082790
Synonym: TM1040_2950
Alternate gene names: NA
Gene position: 3118616-3119233 (Clockwise)
Preceding gene: 99082789
Following gene: 99082791
Centisome position: 97.43
GC content: 58.09
Gene sequence:
>618_bases ATGGCGAAGGCGAACAAGTCTCAAAAGATGGAAAAAGCGCGGCGCGGCACTTTGATGCTGTTGGCTGTTTTCCTGATGGG CTCTGCGGTGGTGCGAATCGCACTCGAAGCGGCTCCGGCGATTGCGCGGGAGGTTGCAGATATCAAATCGGATGAAGCGC CTGTCGAAAAACCGGTGGCTGCGACGGGTCTCGCTTCGGTGCCCGATTCCGCAGAGATGCAAGCCATGCTTGCTGCGTTC CAAAAGCGCGAAGAAAAACTGGCGGCTCGTGAAGCTGAGGTGGAAGATCGGATGCGGGCCCTGGAGATCGCCGATCAGGC CATCGATAAAAAGCTGCAGGATCTTGAGGAGGCTGAGCAAAAGTTGCTGGCCACTCTGGCGCTGGCTGACGGCGCTGCCG AGCAGGACGTCACCACGCTGACAACAGTCTATGAACAGATGAAGCCTAAGGATGCTTCTGCTCTGTTTGAAGAAATGGAC CCTACGTTTGCAGCCGGGTTTCTTGCACGCATGAAACCGGAAGCCGCGGCGGGTATCATGGCAGGGCTGAGCCCCGAGGC TGCATACACGATCAGTGTCGTGCTTGCGGGACGCAACGGCGAGGTGCCCAAGGAGTAA
Upstream 100 bases:
>100_bases CTCAGGCTGAAGCTGCAGAGCAGGCCGACGCGCAGGAAGAGGCCAAACCGGCTGGCCTGATGTTTGTTCGGCATAGCCGC AGTCAGAATCGGGTGGCGTG
Downstream 100 bases:
>100_bases CTTGGGCCCTCACTCAGTCTTTTTTAACAAGACTGCATTACTCTTGAGACAGTGACGGAATTTGGAGCTTACCTATGATC GGGATTGTAGGGATCATTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MAKANKSQKMEKARRGTLMLLAVFLMGSAVVRIALEAAPAIAREVADIKSDEAPVEKPVAATGLASVPDSAEMQAMLAAF QKREEKLAAREAEVEDRMRALEIADQAIDKKLQDLEEAEQKLLATLALADGAAEQDVTTLTTVYEQMKPKDASALFEEMD PTFAAGFLARMKPEAAAGIMAGLSPEAAYTISVVLAGRNGEVPKE
Sequences:
>Translated_205_residues MAKANKSQKMEKARRGTLMLLAVFLMGSAVVRIALEAAPAIAREVADIKSDEAPVEKPVAATGLASVPDSAEMQAMLAAF QKREEKLAAREAEVEDRMRALEIADQAIDKKLQDLEEAEQKLLATLALADGAAEQDVTTLTTVYEQMKPKDASALFEEMD PTFAAGFLARMKPEAAAGIMAGLSPEAAYTISVVLAGRNGEVPKE >Mature_204_residues AKANKSQKMEKARRGTLMLLAVFLMGSAVVRIALEAAPAIAREVADIKSDEAPVEKPVAATGLASVPDSAEMQAMLAAFQ KREEKLAAREAEVEDRMRALEIADQAIDKKLQDLEEAEQKLLATLALADGAAEQDVTTLTTVYEQMKPKDASALFEEMDP TFAAGFLARMKPEAAAGIMAGLSPEAAYTISVVLAGRNGEVPKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21891; Mature: 21760
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKANKSQKMEKARRGTLMLLAVFLMGSAVVRIALEAAPAIAREVADIKSDEAPVEKPVA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH ATGLASVPDSAEMQAMLAAFQKREEKLAAREAEVEDRMRALEIADQAIDKKLQDLEEAEQ HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLATLALADGAAEQDVTTLTTVYEQMKPKDASALFEEMDPTFAAGFLARMKPEAAAGIM HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHCHHHHHHHH AGLSPEAAYTISVVLAGRNGEVPKE HCCCCCCEEEEEEEEECCCCCCCCC >Mature Secondary Structure AKANKSQKMEKARRGTLMLLAVFLMGSAVVRIALEAAPAIAREVADIKSDEAPVEKPVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH ATGLASVPDSAEMQAMLAAFQKREEKLAAREAEVEDRMRALEIADQAIDKKLQDLEEAEQ HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLATLALADGAAEQDVTTLTTVYEQMKPKDASALFEEMDPTFAAGFLARMKPEAAAGIM HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHCHHHHHHHH AGLSPEAAYTISVVLAGRNGEVPKE HCCCCCCEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA