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The map label for this gene is comF [H]

Identifier: 99082742

GI number: 99082742

Start: 3071087

End: 3071818

Strand: Direct

Name: comF [H]

Synonym: TM1040_2902

Alternate gene names: 99082742

Gene position: 3071087-3071818 (Clockwise)

Preceding gene: 99082739

Following gene: 99082743

Centisome position: 95.94

GC content: 63.66

Gene sequence:

>732_bases
ATGACGTTGCGGGCACGGATTCAAACAGCAGTTTCACTCGTCTACCCTGCACGCTGCCTGAACTGCGGCGGGCTGGTCGA
GAGCGACTTTGGCCTGTGTGGCGCGTGTTGGCGTGACACCACCTTTATTTCAGGGCTCGTATGCGAAGGATGCGGTGCGC
CGCTCCCGGGCGAGGATGACGGACAGATGGTTCATTGCGACGCTTGCCTGCGTGCGCCGGGTGAATGGGACCGGGGGCGG
GCGGCTCTGGTTTACACGGGACAGGGTCGCCGGTTGGTGCTGGCACTGAAACACGGTGACCGAACCGACCTGGTGCGCCC
TGCGTCTGCGTGGATGGCGCGGGCTGCACGCGTGCTCTTGAGCCCAAAGCCCCTACTGGTGCCGGTTCCGCTTCATTGGA
CGCGGCTGCTGCACCGCCGGTACAATCAATCCGCCTTGCTGGCCCAGGCGATCGCGGCACGTGAGGAATGCGACTGTTGT
CCCGATGCGCTGATCCGTGTTGCAAAAACGCCCATGCTCGAAGGGTACTCGCGCTCGGAGCGTCGCGCGCTCCTGAGTGA
CGCCATACGTCCCAATCCCCGGATGGCGTCGCGATTAAAGGGCAGGCGGGTGCTGCTCGTGGATGATGTCATGACCAGCG
GATCGACGCTTTCGGCTTGTGCGCGCGCCTGTATGGATGCAGGCGCAAAAAGCACAAATGTCGCTGTTCTCGCCCGGGTC
ACGGGCTCGTGA

Upstream 100 bases:

>100_bases
AACATCGCCTCCGGTTTGCGCCGGGCGCGACGCAGTCGAAGTGCATCACGGTCAAAGATCTGGGGATGAGCCATCGGTTC
TTTTGTCATGAGGTGTACCT

Downstream 100 bases:

>100_bases
AAACTCTGGCAAAGCTTGATAAAGGTGCCCACATGGCGCAAAACCCACAAGCAACGCCTATGGAGACCCACATGAAACCG
GTCGAAATCTACACTTCTCC

Product: competence protein F, putative

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTLRARIQTAVSLVYPARCLNCGGLVESDFGLCGACWRDTTFISGLVCEGCGAPLPGEDDGQMVHCDACLRAPGEWDRGR
AALVYTGQGRRLVLALKHGDRTDLVRPASAWMARAARVLLSPKPLLVPVPLHWTRLLHRRYNQSALLAQAIAAREECDCC
PDALIRVAKTPMLEGYSRSERRALLSDAIRPNPRMASRLKGRRVLLVDDVMTSGSTLSACARACMDAGAKSTNVAVLARV
TGS

Sequences:

>Translated_243_residues
MTLRARIQTAVSLVYPARCLNCGGLVESDFGLCGACWRDTTFISGLVCEGCGAPLPGEDDGQMVHCDACLRAPGEWDRGR
AALVYTGQGRRLVLALKHGDRTDLVRPASAWMARAARVLLSPKPLLVPVPLHWTRLLHRRYNQSALLAQAIAAREECDCC
PDALIRVAKTPMLEGYSRSERRALLSDAIRPNPRMASRLKGRRVLLVDDVMTSGSTLSACARACMDAGAKSTNVAVLARV
TGS
>Mature_242_residues
TLRARIQTAVSLVYPARCLNCGGLVESDFGLCGACWRDTTFISGLVCEGCGAPLPGEDDGQMVHCDACLRAPGEWDRGRA
ALVYTGQGRRLVLALKHGDRTDLVRPASAWMARAARVLLSPKPLLVPVPLHWTRLLHRRYNQSALLAQAIAAREECDCCP
DALIRVAKTPMLEGYSRSERRALLSDAIRPNPRMASRLKGRRVLLVDDVMTSGSTLSACARACMDAGAKSTNVAVLARVT
GS

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=235, Percent_Identity=28.936170212766, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26272; Mature: 26141

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
5.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRARIQTAVSLVYPARCLNCGGLVESDFGLCGACWRDTTFISGLVCEGCGAPLPGEDD
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GQMVHCDACLRAPGEWDRGRAALVYTGQGRRLVLALKHGDRTDLVRPASAWMARAARVLL
CCEEEEHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
SPKPLLVPVPLHWTRLLHRRYNQSALLAQAIAAREECDCCPDALIRVAKTPMLEGYSRSE
CCCCCEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCCHHH
RRALLSDAIRPNPRMASRLKGRRVLLVDDVMTSGSTLSACARACMDAGAKSTNVAVLARV
HHHHHHHHCCCCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
TGS
CCC
>Mature Secondary Structure 
TLRARIQTAVSLVYPARCLNCGGLVESDFGLCGACWRDTTFISGLVCEGCGAPLPGEDD
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GQMVHCDACLRAPGEWDRGRAALVYTGQGRRLVLALKHGDRTDLVRPASAWMARAARVLL
CCEEEEHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
SPKPLLVPVPLHWTRLLHRRYNQSALLAQAIAAREECDCCPDALIRVAKTPMLEGYSRSE
CCCCCEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCCHHH
RRALLSDAIRPNPRMASRLKGRRVLLVDDVMTSGSTLSACARACMDAGAKSTNVAVLARV
HHHHHHHHCCCCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
TGS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]