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The map label for this gene is secB

Identifier: 99082697

GI number: 99082697

Start: 3027115

End: 3027609

Strand: Direct

Name: secB

Synonym: TM1040_2857

Alternate gene names: 99082697

Gene position: 3027115-3027609 (Clockwise)

Preceding gene: 99082696

Following gene: 99082702

Centisome position: 94.57

GC content: 56.36

Gene sequence:

>495_bases
ATGGCCGAAAATGGCGCAGCCGAAGGCACTGCTCAGCAGCCGCAAGTCCAGATGAACATCCTCGGACAGTTCATCCGCGA
TCTGTCCTTTGAAAATGTGATGGCGCAGAAAGGCGTGGGGGGCGAAGTGCAGCCTGACGTGAACGTGCAGGTTGCTCTCG
ACGCCAAAAAGCGCAGCACCGAGAACCAGTACGAAGTCATCACCAAGCTGAACATCGAGTCCAAGAACAAAGCCGGTGGC
GAAGTTCTGTTTGTGCTTGAGCTGGAATATGTCGGCATCTTCAACATCGCAGGCGTGCCCGAGGATCAGCTTCACCCGTT
CCTGCTGATCGAATGCCCGCGGATGCTGTTCCCGTTCCTGCGTCGTATTGTTTCCGACATCAGCCGCGACGGTGGTTTCC
CGCCGCTGAACCTCGACAACATCGATTTTGTTGCAATTTATCGCAACGAGCTGGCCCGTCGTCAGGCAGAAGCCCCTGCC
GAAGTGACCAACTGA

Upstream 100 bases:

>100_bases
GAGGGGCCATCAGGTTGGGTGGAAGGTCCGAAATAAGACTTTGAGCATGGCTCTCCAAGCTGATAAGCACGCTGCGACAC
GTTAAATTCAGGAGATTTCC

Downstream 100 bases:

>100_bases
GCCCTCGCGTTCTGGTCAATTAAAGCTCTGGCGCTGCGATCAAAGATCGCGGCGCTTTTTCATTCCGAGGTAACAGCCCA
CAAAGCATCCTCGCCAAGTT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MAENGAAEGTAQQPQVQMNILGQFIRDLSFENVMAQKGVGGEVQPDVNVQVALDAKKRSTENQYEVITKLNIESKNKAGG
EVLFVLELEYVGIFNIAGVPEDQLHPFLLIECPRMLFPFLRRIVSDISRDGGFPPLNLDNIDFVAIYRNELARRQAEAPA
EVTN

Sequences:

>Translated_164_residues
MAENGAAEGTAQQPQVQMNILGQFIRDLSFENVMAQKGVGGEVQPDVNVQVALDAKKRSTENQYEVITKLNIESKNKAGG
EVLFVLELEYVGIFNIAGVPEDQLHPFLLIECPRMLFPFLRRIVSDISRDGGFPPLNLDNIDFVAIYRNELARRQAEAPA
EVTN
>Mature_163_residues
AENGAAEGTAQQPQVQMNILGQFIRDLSFENVMAQKGVGGEVQPDVNVQVALDAKKRSTENQYEVITKLNIESKNKAGGE
VLFVLELEYVGIFNIAGVPEDQLHPFLLIECPRMLFPFLRRIVSDISRDGGFPPLNLDNIDFVAIYRNELARRQAEAPAE
VTN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=138, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_SILST (Q1GCM7)

Other databases:

- EMBL:   CP000377
- RefSeq:   YP_614851.1
- ProteinModelPortal:   Q1GCM7
- SMR:   Q1GCM7
- STRING:   Q1GCM7
- GeneID:   4076391
- GenomeReviews:   CP000377_GR
- KEGG:   sit:TM1040_2857
- NMPDR:   fig|292414.1.peg.1760
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q1GCM7
- ProtClustDB:   PRK05751
- BioCyc:   SSP292414:TM1040_2857-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18231; Mature: 18100

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENGAAEGTAQQPQVQMNILGQFIRDLSFENVMAQKGVGGEVQPDVNVQVALDAKKRST
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
ENQYEVITKLNIESKNKAGGEVLFVLELEYVGIFNIAGVPEDQLHPFLLIECPRMLFPFL
CCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCCHHHCCCEEEEECHHHHHHHH
RRIVSDISRDGGFPPLNLDNIDFVAIYRNELARRQAEAPAEVTN
HHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AENGAAEGTAQQPQVQMNILGQFIRDLSFENVMAQKGVGGEVQPDVNVQVALDAKKRST
CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
ENQYEVITKLNIESKNKAGGEVLFVLELEYVGIFNIAGVPEDQLHPFLLIECPRMLFPFL
CCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCCHHHCCCEEEEECHHHHHHHH
RRIVSDISRDGGFPPLNLDNIDFVAIYRNELARRQAEAPAEVTN
HHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA