| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99082685
Identifier: 99082685
GI number: 99082685
Start: 3012733
End: 3015666
Strand: Direct
Name: 99082685
Synonym: TM1040_2845
Alternate gene names: NA
Gene position: 3012733-3015666 (Clockwise)
Preceding gene: 99082684
Following gene: 99082686
Centisome position: 94.12
GC content: 59.88
Gene sequence:
>2934_bases ATGTTTGATCCGTCTCAAACCAAACCCAGGCTGTTTGCGGTCCCTTGTGGTGTAGATTTCCCACGCGCACTTTATGACGG ACTCACTGCCCGTTTTGCCGATGCCCTCCCGGAAGAGTTGGCACGGGTCGAGTTGATCCTCAACACGGAACGCATGCAAC GCCGCGTGCGGCAGTTGTTTGACGCAGGACCAGCGCGTCTCTTGCCTCGCATCTCGCTCCTGTCGGGATTGAACAAAGAA GCAAATCTACGTGGCCTGCCACCTGCACTGCCTCCGCTGCGCCGCCGTCTGGAGCTTTCGCAGTTGATCGCAAAGCTACT GGATGCGCAGCCCGATTTGGCTGCTCGCGCCTCGCTTTACGATCTTTCCGACAGCCTGGCCGAATTGATCGACGAGATGC AGAGTGAAGGCGTGAGCACCGATCAGATCCGCGCGCTTGATGTGTCTGATATGTCCGGGCACTGGAAACGGGCGCAGGAC TTCATCGGCATCGCGGATCAATTTGTGGACATGCACGAAGGTGCGCTCGACGTGAATGCCCGGCAGCGGCAGGTTGTGAT GGATCTGATCGCAGAATGGGAACAGACGCCACCAACGCATCCCATCATTTTGGCAGGCTCAACCGGGTCTCGGGGCACGA CGCTTCTTCTGATGGAGGCGATTGCTCGCCTACCACAGGGCGCGGTCGTCTTGCCGGGATTTGATTTTGACCAGCCAGAA CCCGTCTGGGAGAGCCTGACAGATGGGTTGGTTGCGGAAGATCATCCGCAATACCGGTTTCACAAACTGATGCGCGACCT TGATCTACGCCCCTCGGATATTTGCCGCTGGGTTGATACAACGCCCCAATCTCCTGCTCGCAATCGGTTGATTTCTCTCG CACTTCGCCCAGCTCCGGTGACGGATGCCTGGATGAGTGAAGGCCCCTACCTCAAAGATCTGGACCAAGCCACAGAGGCG CTGACGCTGGTGGAGGCCGCAAATCCCCGAAGCGAAGCCTTGGCTATCGCTTTGCGCCTGCGTCAGGCAGCCGAGGACGG TCAGACCGCAGCCCTGATCACGCCCGACCGCATGCTGACACGCCAGGTCTCTGCCGCGCTGGATCGCTGGGACATTCTGC CAGACGATTCTGCGGGATTGCCGCTTCAATTGTCGCCCCCTGGACGGTTTCTGCGACATGTGGCCGATCTGTTTTGTCGC CCTCTTCAGGCCGATATGTTGCTCACGCTTCTCAAGCATCCGCTCACCCATTCCGGCGCGGAGCGAGGTCTGCATTTGCT GCACACCCGTGATCTGGAGCTCCATATGCGCCGCAACGGACCGCCCTTCCCGGACTGCGAGAGCCTCAGTGCCTTTGGGA GCACGCGCGATTTGCAGCCGGGTTGGTCAGATTGGCTAGCGCAGAGCTTTGCCGGTCGAGATCGGACGGGCACGCGCGCC CTGAGTGACTGGGTGTCAGATTTGCGTGAGACCGCCGAAGGGATCGCAGCAGGATCGCAGGTCGGCGGCACGGGCGAGCT CTGGGACAAAAAAGCAGGGAACGCAGCGCGCGACGTTCTTGAGGAATTGCAGGCACAATCACCTCACGGTGGCGACATGA CCGCGCGCGATTTTGCAGACCTCCTGGGCGCACTCTTGTCGCAGGGCGAGGTGCGGGATCGCGATGCGCCATATGGATCC ATTATGATCTGGGGCACGCTCGAGGCCCGCGTGCAAGGCGCCGATCTTGTTATCCTCGGTGGTCTCAACGAGGGGAGCTG GCCAGAAGCCGCGCGTCCTGATCCCTGGCTCAATCGTAAATTGCGCCACGAGGCAGGCCTTTTGCTGCCAGAGCGGCGCA TTGGCCTATCCGCACATGATTTTCAGCAGGCTGTCGCAGCGCCCGAAGTCTGGCTCACGCGTGCTGTCCGCTCCGAAGAG GCCGACACGGTCCCGTCGCGCTGGCTCAACCGTATGACTAACCTTCTGGGAGGTCTACCGGATCAGGGCGGACAAGCCGC GCTGTCGGCCATGCGAATGCGCGGCCAGGTCTGGCTGGATTGGGCAAGCGTTCTTGATGCGCCAGTGCCAACCCCTCTGA GCCCACGCCCCTCGCCGCGCCCGCCAGTTGCAGCACGGCCCCGTAGATTGACGGTGACAGAAATTCCAAAACTGATCCGT GATCCTTATGCGATCTACGCCAAACATGTACTGCGCCTGAAACCCGTGGATCCGCTGCTGCAGGAACCTGATGCACTGCT GCGCGGCACAATCATCCACAAGGTTTTGGAAGACTTTATAAAATCCGCTCAAGAGCAGCCGGAAAATCTCTCGGCCCGTC ACTTCATCGACCACGCTCGACGCGTCCTCGAAACCGAGGTGCCCTGGCCCGTTGCGCGCACGCTTTGGCTAACCCGCCTA AAGAAAGTGGCCGAAGATTTTGTCACCGGTGAACGACAACGTCAGTCGCGGGCGCGCCCATCAGGGTTTGAGAAATCTGG CCAGGTCCGTCTTGATCCACTTGATTTCGAAATCGCGGCCAAGGCGGACCGGATCGATGTGGACGAGCGTGGCTTGCTCC ATCTGTATGATTACAAGACGGGCGACCCGCCTTCGGAAAAACAGCAGAAATCCTTTGAAAAACAGCTTCTGATCGAGACC GCCATGGCCGAACAGGGCGCGTTTTCAGACTATGGTGCGGCGCGGGTGGAGCGTGCGCTCTATATCGGGTTAAAGCCTCC GGTGAAGGAGGTTGCCGCACCCATTCTGGACGAGCCACCCGCAAAGGTGTGGGCGGAGTTGCGCAGTCTGGTTGAGGCGT ATTTCGACGCAGAGCAAGGCTTTAGCAGCCGCCGAATGGTACACCGGGATGATTTTGCCGGGGATTACGATCACCTTGCC CGCTATGGCGAATGGGATCGCAGTTCGGATCCGGTGCCGGAGGATTTGACATGA
Upstream 100 bases:
>100_bases CCAGAGGGCCGAGCAACCGCCGTGGAATATCCGGGCCACTGGTGTGACGTTGGCCGCCCTGAAGGGCTCAAGTTGGCTGA AGAAATGATTGCAGAATAAG
Downstream 100 bases:
>100_bases GCCGCAACGCCGCCTCAGAGGCACAGTTTCGCGCCGCCCGCCCAGATGCCTCTACTTGGCTTGCCGCCAATGCCGGCTCG GGCAAGACCAAGGTGCTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 977; Mature: 977
Protein sequence:
>977_residues MFDPSQTKPRLFAVPCGVDFPRALYDGLTARFADALPEELARVELILNTERMQRRVRQLFDAGPARLLPRISLLSGLNKE ANLRGLPPALPPLRRRLELSQLIAKLLDAQPDLAARASLYDLSDSLAELIDEMQSEGVSTDQIRALDVSDMSGHWKRAQD FIGIADQFVDMHEGALDVNARQRQVVMDLIAEWEQTPPTHPIILAGSTGSRGTTLLLMEAIARLPQGAVVLPGFDFDQPE PVWESLTDGLVAEDHPQYRFHKLMRDLDLRPSDICRWVDTTPQSPARNRLISLALRPAPVTDAWMSEGPYLKDLDQATEA LTLVEAANPRSEALAIALRLRQAAEDGQTAALITPDRMLTRQVSAALDRWDILPDDSAGLPLQLSPPGRFLRHVADLFCR PLQADMLLTLLKHPLTHSGAERGLHLLHTRDLELHMRRNGPPFPDCESLSAFGSTRDLQPGWSDWLAQSFAGRDRTGTRA LSDWVSDLRETAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTARDFADLLGALLSQGEVRDRDAPYGS IMIWGTLEARVQGADLVILGGLNEGSWPEAARPDPWLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAVRSEE ADTVPSRWLNRMTNLLGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPVPTPLSPRPSPRPPVAARPRRLTVTEIPKLIR DPYAIYAKHVLRLKPVDPLLQEPDALLRGTIIHKVLEDFIKSAQEQPENLSARHFIDHARRVLETEVPWPVARTLWLTRL KKVAEDFVTGERQRQSRARPSGFEKSGQVRLDPLDFEIAAKADRIDVDERGLLHLYDYKTGDPPSEKQQKSFEKQLLIET AMAEQGAFSDYGAARVERALYIGLKPPVKEVAAPILDEPPAKVWAELRSLVEAYFDAEQGFSSRRMVHRDDFAGDYDHLA RYGEWDRSSDPVPEDLT
Sequences:
>Translated_977_residues MFDPSQTKPRLFAVPCGVDFPRALYDGLTARFADALPEELARVELILNTERMQRRVRQLFDAGPARLLPRISLLSGLNKE ANLRGLPPALPPLRRRLELSQLIAKLLDAQPDLAARASLYDLSDSLAELIDEMQSEGVSTDQIRALDVSDMSGHWKRAQD FIGIADQFVDMHEGALDVNARQRQVVMDLIAEWEQTPPTHPIILAGSTGSRGTTLLLMEAIARLPQGAVVLPGFDFDQPE PVWESLTDGLVAEDHPQYRFHKLMRDLDLRPSDICRWVDTTPQSPARNRLISLALRPAPVTDAWMSEGPYLKDLDQATEA LTLVEAANPRSEALAIALRLRQAAEDGQTAALITPDRMLTRQVSAALDRWDILPDDSAGLPLQLSPPGRFLRHVADLFCR PLQADMLLTLLKHPLTHSGAERGLHLLHTRDLELHMRRNGPPFPDCESLSAFGSTRDLQPGWSDWLAQSFAGRDRTGTRA LSDWVSDLRETAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTARDFADLLGALLSQGEVRDRDAPYGS IMIWGTLEARVQGADLVILGGLNEGSWPEAARPDPWLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAVRSEE ADTVPSRWLNRMTNLLGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPVPTPLSPRPSPRPPVAARPRRLTVTEIPKLIR DPYAIYAKHVLRLKPVDPLLQEPDALLRGTIIHKVLEDFIKSAQEQPENLSARHFIDHARRVLETEVPWPVARTLWLTRL KKVAEDFVTGERQRQSRARPSGFEKSGQVRLDPLDFEIAAKADRIDVDERGLLHLYDYKTGDPPSEKQQKSFEKQLLIET AMAEQGAFSDYGAARVERALYIGLKPPVKEVAAPILDEPPAKVWAELRSLVEAYFDAEQGFSSRRMVHRDDFAGDYDHLA RYGEWDRSSDPVPEDLT >Mature_977_residues MFDPSQTKPRLFAVPCGVDFPRALYDGLTARFADALPEELARVELILNTERMQRRVRQLFDAGPARLLPRISLLSGLNKE ANLRGLPPALPPLRRRLELSQLIAKLLDAQPDLAARASLYDLSDSLAELIDEMQSEGVSTDQIRALDVSDMSGHWKRAQD FIGIADQFVDMHEGALDVNARQRQVVMDLIAEWEQTPPTHPIILAGSTGSRGTTLLLMEAIARLPQGAVVLPGFDFDQPE PVWESLTDGLVAEDHPQYRFHKLMRDLDLRPSDICRWVDTTPQSPARNRLISLALRPAPVTDAWMSEGPYLKDLDQATEA LTLVEAANPRSEALAIALRLRQAAEDGQTAALITPDRMLTRQVSAALDRWDILPDDSAGLPLQLSPPGRFLRHVADLFCR PLQADMLLTLLKHPLTHSGAERGLHLLHTRDLELHMRRNGPPFPDCESLSAFGSTRDLQPGWSDWLAQSFAGRDRTGTRA LSDWVSDLRETAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTARDFADLLGALLSQGEVRDRDAPYGS IMIWGTLEARVQGADLVILGGLNEGSWPEAARPDPWLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAVRSEE ADTVPSRWLNRMTNLLGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPVPTPLSPRPSPRPPVAARPRRLTVTEIPKLIR DPYAIYAKHVLRLKPVDPLLQEPDALLRGTIIHKVLEDFIKSAQEQPENLSARHFIDHARRVLETEVPWPVARTLWLTRL KKVAEDFVTGERQRQSRARPSGFEKSGQVRLDPLDFEIAAKADRIDVDERGLLHLYDYKTGDPPSEKQQKSFEKQLLIET AMAEQGAFSDYGAARVERALYIGLKPPVKEVAAPILDEPPAKVWAELRSLVEAYFDAEQGFSSRRMVHRDDFAGDYDHLA RYGEWDRSSDPVPEDLT
Specific function: Unknown
COG id: COG3893
COG function: function code L; Inactivated superfamily I helicase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011335 - InterPro: IPR022436 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 108845; Mature: 108845
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDPSQTKPRLFAVPCGVDFPRALYDGLTARFADALPEELARVELILNTERMQRRVRQLF CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH DAGPARLLPRISLLSGLNKEANLRGLPPALPPLRRRLELSQLIAKLLDAQPDLAARASLY CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH DLSDSLAELIDEMQSEGVSTDQIRALDVSDMSGHWKRAQDFIGIADQFVDMHEGALDVNA HHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH RQRQVVMDLIAEWEQTPPTHPIILAGSTGSRGTTLLLMEAIARLPQGAVVLPGFDFDQPE HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCC PVWESLTDGLVAEDHPQYRFHKLMRDLDLRPSDICRWVDTTPQSPARNRLISLALRPAPV HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHEEECCCCC TDAWMSEGPYLKDLDQATEALTLVEAANPRSEALAIALRLRQAAEDGQTAALITPDRMLT CHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH RQVSAALDRWDILPDDSAGLPLQLSPPGRFLRHVADLFCRPLQADMLLTLLKHPLTHSGA HHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHH ERGLHLLHTRDLELHMRRNGPPFPDCESLSAFGSTRDLQPGWSDWLAQSFAGRDRTGTRA HCCEEEEEECCCEEHCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHH LSDWVSDLRETAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTARDFAD HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH LLGALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAARPDPWLNRK HHHHHHCCCCCCCCCCCCCCEEEEEEHHHEECCCCEEEEECCCCCCCCCCCCCCHHHHHH LRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAVRSEEADTVPSRWLNRMTNLLGGLP HHHHCCCCCCHHHCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC DQGGQAALSAMRMRGQVWLDWASVLDAPVPTPLSPRPSPRPPVAARPRRLTVTEIPKLIR CCCHHHHHHHHHHCCHHEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH DPYAIYAKHVLRLKPVDPLLQEPDALLRGTIIHKVLEDFIKSAQEQPENLSARHFIDHAR CHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH RVLETEVPWPVARTLWLTRLKKVAEDFVTGERQRQSRARPSGFEKSGQVRLDPLDFEIAA HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEECCCCCEEEC KADRIDVDERGLLHLYDYKTGDPPSEKQQKSFEKQLLIETAMAEQGAFSDYGAARVERAL CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH YIGLKPPVKEVAAPILDEPPAKVWAELRSLVEAYFDAEQGFSSRRMVHRDDFAGDYDHLA EECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH RYGEWDRSSDPVPEDLT HCCCCCCCCCCCCCCCC >Mature Secondary Structure MFDPSQTKPRLFAVPCGVDFPRALYDGLTARFADALPEELARVELILNTERMQRRVRQLF CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH DAGPARLLPRISLLSGLNKEANLRGLPPALPPLRRRLELSQLIAKLLDAQPDLAARASLY CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH DLSDSLAELIDEMQSEGVSTDQIRALDVSDMSGHWKRAQDFIGIADQFVDMHEGALDVNA HHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH RQRQVVMDLIAEWEQTPPTHPIILAGSTGSRGTTLLLMEAIARLPQGAVVLPGFDFDQPE HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCC PVWESLTDGLVAEDHPQYRFHKLMRDLDLRPSDICRWVDTTPQSPARNRLISLALRPAPV HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHEEECCCCC TDAWMSEGPYLKDLDQATEALTLVEAANPRSEALAIALRLRQAAEDGQTAALITPDRMLT CHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH RQVSAALDRWDILPDDSAGLPLQLSPPGRFLRHVADLFCRPLQADMLLTLLKHPLTHSGA HHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHH ERGLHLLHTRDLELHMRRNGPPFPDCESLSAFGSTRDLQPGWSDWLAQSFAGRDRTGTRA HCCEEEEEECCCEEHCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHH LSDWVSDLRETAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTARDFAD HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH LLGALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAARPDPWLNRK HHHHHHCCCCCCCCCCCCCCEEEEEEHHHEECCCCEEEEECCCCCCCCCCCCCCHHHHHH LRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAVRSEEADTVPSRWLNRMTNLLGGLP HHHHCCCCCCHHHCCCCHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC DQGGQAALSAMRMRGQVWLDWASVLDAPVPTPLSPRPSPRPPVAARPRRLTVTEIPKLIR CCCHHHHHHHHHHCCHHEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH DPYAIYAKHVLRLKPVDPLLQEPDALLRGTIIHKVLEDFIKSAQEQPENLSARHFIDHAR CHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH RVLETEVPWPVARTLWLTRLKKVAEDFVTGERQRQSRARPSGFEKSGQVRLDPLDFEIAA HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEECCCCCEEEC KADRIDVDERGLLHLYDYKTGDPPSEKQQKSFEKQLLIETAMAEQGAFSDYGAARVERAL CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH YIGLKPPVKEVAAPILDEPPAKVWAELRSLVEAYFDAEQGFSSRRMVHRDDFAGDYDHLA EECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH RYGEWDRSSDPVPEDLT HCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA